Repositories list

• afdb-clusters-web

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•2•1•0•Updated Oct 4, 2024Oct 4, 2024

• Metabuli

  Public
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  bioinformaticstaxonomymetagenomics+ 2k-mertaxonomic-classification

  C++

  •

  GNU General Public License v3.0

  •10•111•10•0•Updated Oct 3, 2024Oct 3, 2024

• foldseek

  Public
  Foldseek enables fast and sensitive comparisons of large structure sets.

  clusteringprotein-structurealignments+ 1bioinformatics

  C

  •

  GNU General Public License v3.0

  •99•780•162•2•Updated Sep 30, 2024Sep 30, 2024

• Metabuli-App

  Public
  HTML

  •

  GNU General Public License v3.0

  •2•19•0•0•Updated Sep 30, 2024Sep 30, 2024

• unicore

  Public
  Universal and efficient core gene phylogeny with Foldseek and ProstT5

  Rust

  •

  GNU General Public License v3.0

  •1•13•0•0•Updated Sep 19, 2024Sep 19, 2024

• foldseek-regression

  Public
  Regression test for foldseek

  Shell

  •2•3•0•1•Updated Sep 14, 2024Sep 14, 2024

• foldmason

  Public
  Multiple Protein Structure Alignment at Scale with FoldMason

  bioinformaticsprotein-structuremsa

  C

  •

  GNU General Public License v3.0

  •10•115•8•0•Updated Sep 13, 2024Sep 13, 2024

• foldseek-multimer-analysis

  Public
  Python

  •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

• foldmason-analysis

  Public
  Shell

  •0•1•0•0•Updated Aug 27, 2024Aug 27, 2024

• foldcomp

  Public
  Compressing protein structures effectively with torsion angles

  bioinformaticsprotein-structurecompression

  C++

  •

  GNU General Public License v3.0

  •14•152•22•0•Updated Aug 9, 2024Aug 9, 2024

• ufcg

  Public
  UFCG: Universal Fungal Core Genes

  genomicsphylogeneticsfungi+ 2marker-gene-analysisbioinformatics

  Java

  •

  GNU General Public License v3.0

  •0•31•16•0•Updated Jul 9, 2024Jul 9, 2024

• alphafold

  Public
  Open source code for AlphaFold.

  Python

  •

  Apache License 2.0

  •2.2k•10•0•2•Updated Jul 9, 2024Jul 9, 2024

• ufcg-web

  Public
  UFCG website

  HTML

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 2, 2024Jul 2, 2024

• colabfold-protocol

  Public
  ColabFold protocol

  Jupyter Notebook

  •4•22•0•0•Updated Jun 22, 2024Jun 22, 2024

• SeekRank

  Public
  Rank homologous protein sequences based on a regressor trained on experimental measures

  Jupyter Notebook

  •

  MIT License

  •0•6•0•0•Updated Jun 22, 2024Jun 22, 2024

• foldseek-analysis

  Public
  Scripts to benchmark and train foldseek

  Jupyter Notebook

  •4•28•3•1•Updated May 22, 2024May 22, 2024

• petasearch

  Public
  🧬 Efficient parallelized peta-scale protein database search

  C

  •

  GNU General Public License v3.0

  •0•42•5•0•Updated Jan 4, 2024Jan 4, 2024

• petasearch-regression

  Public
  C++

  •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

• Metabuli-regression

  Public
  Regression tests for Metabuli

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• afdb-clusters-analysis

  Public
  Scripts to generate and analyze afdb clusters

  Jupyter Notebook

  •0•8•1•0•Updated Sep 15, 2023Sep 15, 2023

• Metabuli-temp

  Public archive
  Taxonomical classifier using AD k-mer

  C++

  •

  GNU General Public License v3.0

  •10•1•0•0•Updated May 30, 2023May 30, 2023

• foldcomp-analysis

  Public
  C

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Feb 20, 2023Feb 20, 2023

• conterminator

  Public
  Detection of incorrectly labeled sequences across kingdoms

  C

  •

  GNU General Public License v3.0

  •7•77•15•1•Updated Oct 25, 2022Oct 25, 2022

• probeit

  Public
  Design capture probes

  Python

  •

  GNU General Public License v3.0

  •2•8•0•0•Updated Apr 26, 2022Apr 26, 2022

• steineggerlab.github.io

  Public
  Steinegger Lab page

  HTML

  •0•0•0•0•Updated Mar 12, 2020Mar 12, 2020