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1. HiC_Genome_Assembler HiC_Genome_Assembler Public

   Code base for a HiC based genome assembly algorithm

   Python 2

2. MLP_training_with_noisy_labels MLP_training_with_noisy_labels Public

   MLP training with potentially noisy labels

   Jupyter Notebook

3. communityStructure_louvainMethod communityStructure_louvainMethod Public

   This repository is a python implementation of the Lovain Method for fast unfolding of community structure in large networks (a rewording of the original paper https://arxiv.org/abs/0803.0476)

   Jupyter Notebook 5 1

4. SyntenicCoordinateShift SyntenicCoordinateShift Public

   This jupyter notebook/project is essentially a set of functions that will allow for the conversion of one genomes coordinates to another via their syntenic relationship (if it exists). The program …

   Jupyter Notebook 1

5. BamPositionalCoverageStats BamPositionalCoverageStats Public

   This repository contains a program to query positions from an alignment file (bam file) and report back coverage statistics. Things like the number of reads found, number of As,Cs,Ts,Gs, "proper pa…

   Jupyter Notebook 1 2

6. md5SumCheck md5SumCheck Public

   Simple python scripts to recursively check md5sums for all files within a directory and subdirectories

   Python 1