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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 225 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 47 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 49 5

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 14 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 17 4

Repositories

Showing 10 of 233 repositories
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 1 27 6 Updated Sep 23, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Jupyter Notebook 4 MIT 1 25 3 Updated Sep 23, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 14 BSD-3-Clause 4 15 0 Updated Sep 23, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Python 7 3 56 5 Updated Sep 23, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 5 3 219 (1 issue needs help) 16 Updated Sep 23, 2024
  • malco Public

    Multilingual Analysis of LLMs for Clinical Observations

    monarch-initiative/malco’s past year of commit activity
    Python 3 BSD-3-Clause 0 4 1 Updated Sep 22, 2024
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 0 0 9 0 Updated Sep 22, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 225 CC-BY-4.0 53 391 (2 issues need help) 29 Updated Sep 20, 2024
  • curate-gpt Public

    LLM-driven curation assist tool (pre-alpha)

    monarch-initiative/curate-gpt’s past year of commit activity
    Jupyter Notebook 56 BSD-3-Clause 11 20 4 Updated Sep 20, 2024
  • kghub-downloader Public

    Configuration based file caching downloader

    monarch-initiative/kghub-downloader’s past year of commit activity
    Python 6 0 3 3 Updated Sep 20, 2024
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