Skip to content

Releases: yangao07/abPOA

abPOA-v1.5.3

18 Sep 19:35
Compare
Choose a tag to compare
  • Fix a score matrix bug in pyabpoa
  • Add consensus mode for pyabpoa: most frequent base at each pos

abPOA-v1.5.2

17 Jul 20:35
Compare
Choose a tag to compare
  • Fix a backtrack bug in seeding mode (#66)
  • Add consensus mode: most frequent base at each pos (-a1)

abPOA-v1.5.1

16 Jan 01:56
Compare
Choose a tag to compare
  • Fix a memory allocation bug in v1.5.0 (caused by int overflow when memory is >4G)

abPOA-v1.4.3

19 Dec 00:23
Compare
Choose a tag to compare
  • Fix pyabpoa installation on macos
  • pip install also works now

abPOA-v1.4.2

13 Dec 04:12
Compare
Choose a tag to compare

Fix an installation bug

abPOA-v1.4.1

09 Jun 15:53
Compare
Choose a tag to compare
  • Take quality score in FASTQ format file as weight (-Q)

abPOA-v1.4.0

15 Mar 04:01
Compare
Choose a tag to compare
abPOA-v1.4.0 Pre-release
Pre-release
  • Allow to generate multiple consensus sequences from graph alignment (-d)
  • Output sequence name by default in MSA format, remove -A/--msa-header

abPOA-v1.3.0

12 Jan 07:37
Compare
Choose a tag to compare
  • Use SIMDE to handle SIMD instructions
  • Set seeding as disabled by default, -S/--seeding to enable seeding, remove -N/--no-seeding
  • Set min. size of POA windows as 500 in seeding mode
  • Add -c/--amio-acid to align amino acid input sequences
  • Add is_aa parameter in pyabpoa to align amino acid input sequences
  • Fix CMakeLists.txt

abPOA-v1.2.5

13 Jul 03:08
Compare
Choose a tag to compare
  • Fix a bug in abpoa_poa

abPOA-v1.2.4

02 Jun 02:22
Compare
Choose a tag to compare
  • Fix score overflow bugs