abPOA-v1.2.2

• Allow scoring matrix file as input

abPOA-v1.2.1

• Add minimizer-based seeding, reduce memory usage for long input sequences
• Remove redundant topological sorting in anchor-POA mode

abPOA-v1.2.0

• Added minimizer-based seeding, reduce memory usage for long input sequences

• Seeding is not performed for the graph input, will update later.

abPOA-v1.1.0

• add -i/--incrmnt

abPOA-v1.0.6

• Fixed a bug in read id assignment
• Fixed a bug in DP of first row
• Archived evaluation datasets and scripts

abPOA-v1.0.5

• Fix a bug in backtrack

abPOA-v1.0.4

• Added read ID as head in MSA output: -A
• Added GFA output: -r3/-r4
• Added ambiguous strand mode: -s

abPOA-v1.0.3

• Fix a seg-fault for very long input sequences

abPOA-v1.0.2

• Fix a potential bug in alignment backtrace
• For short sequences, use 16 bits to store score instead of 8 bits.

abPOA-v1.0.1

• Achieve speed improvement on large depth dataset
• Fix a bug which usually shows up when lengths of input sequences differ greatly