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Hi! foldseek team
I am using the clustering function of foldseek. It sometimes works and sometimes it doesn't
Here is example and question. The problem I see is that the number of amino acids is too small. In fact, the protein length I uploaded is long enough.
Query database size: 2 type: Aminoacid
Estimated memory consumption: 977M
Target database size: 2 type: Aminoacid
Index table k-mer threshold: 154 at k-mer size 6
Index table: counting k-mers
[=================================================================] 2 0s 0ms
Index table: Masked residues: 0
No k-mer could be extracted for the database ./input_step_redundancy_ss.
Maybe the sequences length is less than 14 residues.
Error: Prefilter step 0 died
Error: Search died
Environment
foldseek Version: 9.427df8a
The text was updated successfully, but these errors were encountered:
Hi! foldseek team
I am using the clustering function of foldseek. It sometimes works and sometimes it doesn't
Here is example and question. The problem I see is that the number of amino acids is too small. In fact, the protein length I uploaded is long enough.
command
dataset
dataset.zip
Foldssek Output (for bugs)
Environment
foldseek Version: 9.427df8a
The text was updated successfully, but these errors were encountered: