An error occurred in convertalis when outputting alntmscore、fident and prob

[TigerWindWood]

Thank you for creating such an efficient tool.

Expected Behavior

I would like to obtain a foldseek result that includes alntmscore and the protein sequences of the hits

Current Behavior

$foldseek createdb query.pdb queryDB
$foldseek search queryDB targetDB aln_DB tmp
$foldseek convertalis queryDB targetDB aln_DB result.tsv --format-mode 4 --format-output query,target,alntmscore,fident,evalue,bits,prob,lddt,qstart,qend,tstart,tend,qcov,tcov,tseq
An error occurred: "Backtrace cigar is missing in the alignment result. Please recompute the alignment with the -a flag."
I followed the instructions and executed 'mmseqs align queryDB targetDB aln_DB alnNew -a', but the same error still occurred.
When I executed “$foldseek convertalis queryDB targetDB aln_DB result.tsv --format-mode 4 --format-output query,target,fident,evalue,bits,qstart,qend,tstart,tend,qcov,tcov,tseq,” it successfully output the results.
It seems that convertalis encountered an issue when outputting alntmscore, fident, and prob.

Foldssek Output (for bugs)

MMseqs Version: 9.427df8a
Substitution matrix aa:3di.out,nucl:3di.out
Alignment format 4
Format alignment output query,target,alntmscore,fident,evalue,bits,prob,lddt,qstart,qend,tstart,tend,qcov,tcov,tseq
Gap open cost aa:10,nucl:10
Gap extension cost aa:1,nucl:1
Database output false
Preload mode 0
Threads 150
Compressed 0
Verbosity 3
Exact TMscore 0

[=================================================================] 100.00% 1 eta -
Backtrace cigar is missing in the alignment result. Please recompute the alignment with the -a flag.
Command: mmseqs align queryDB targetDB aln_DB alnNew -a

Your Environment

foldseek Version: 9.427df8a