Release nf-core/scrnaseq V 2.1.0 "Gray Nickel Beagle" Latest · nf-core/scrnaseq

v2.1.0 - 2022-10-06 "Green Mercury Siberian Husky"

Alevin workflow updated to use Alevin-Fry via simpleaf - thanks to @rob-p for supporting this and @fmalmeida implementing the support

Fixed Kallistobustools workflow #123 by upgrading to nf-core/modules module
Fixed matrix conversion error when running STAR with --soloFeatures GeneFull #135
Fixed seurat matrix conversion error when running with conda profile #136
Fixed Kallistobustools module #116. By updating nf-core module and making sure conversion modules take into account the different outputs produced by kallisto standard and non-standard workflows.
Updated pipeline template to nf-core/tools 2.6

Bump version dev by @apeltzer in #114
Add mimetype to input parameter in schema by @drpatelh in #118
Addition of MTX_TO_H5AD conversion modules by @fmalmeida in #117
Dev - Adding FastQC to the pipeline, with integration into MultiQC by @heylf in #121
Add seurat conversion by @fmalmeida in #125
KBTools update to nf-core module by @apeltzer in #126
fixing paths after kallisto update by @fmalmeida in #127
PR: kallisto fix by @fmalmeida in #131
Fix README shields / zenodo info by @mribeirodantas in #132
fix: STAR mtx conversion when using GeneFull by @RHReynolds in #135
fix(mtx_to_seurat): could not find ReadMtx using conda profile by @RHReynolds in #136
Parse kallisto non-standard (spliced and unspliced) outputs by @fmalmeida in #133
FIX: add "else if" instead of if-if by @fmalmeida in #140
Important! Template update for nf-core/tools v2.5.1 by @nf-core-bot in #143
Add def for print_error function by @vjmarteau in #145
Repair inconsistency by @Khajidu in #148
repair inconsistency by @Khajidu in #149
Important! Template update for nf-core/tools v2.6 by @nf-core-bot in #151
Switch from alevin to alevin-fry (with simpleaf) by @fmalmeida in #139
Enable iGenomes by @robsyme in #144
Release PR 2.1.0 by @apeltzer in #154

Full Changelog: 2.0.0...2.1.0