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Merge pull request #154 from nf-core/dev
Release PR 2.1.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| email_template.html | ||
| adaptivecard.json | ||
| .nextflow* | ||
| work/ | ||
| data/ | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| cff-version: 1.2.0 | ||
| message: "If you use `nf-core tools` in your work, please cite the `nf-core` publication" | ||
| authors: | ||
| - family-names: Ewels | ||
| given-names: Philip | ||
| - family-names: Peltzer | ||
| given-names: Alexander | ||
| - family-names: Fillinger | ||
| given-names: Sven | ||
| - family-names: Patel | ||
| given-names: Harshil | ||
| - family-names: Alneberg | ||
| given-names: Johannes | ||
| - family-names: Wilm | ||
| given-names: Andreas | ||
| - family-names: Garcia | ||
| given-names: Maxime Ulysse | ||
| - family-names: Di Tommaso | ||
| given-names: Paolo | ||
| - family-names: Nahnsen | ||
| given-names: Sven | ||
| title: "The nf-core framework for community-curated bioinformatics pipelines." | ||
| version: 2.4.1 | ||
| doi: 10.1038/s41587-020-0439-x | ||
| date-released: 2022-05-16 | ||
| url: https://github.com/nf-core/tools | ||
| prefered-citation: | ||
| type: article | ||
| authors: | ||
| - family-names: Ewels | ||
| given-names: Philip | ||
| - family-names: Peltzer | ||
| given-names: Alexander | ||
| - family-names: Fillinger | ||
| given-names: Sven | ||
| - family-names: Patel | ||
| given-names: Harshil | ||
| - family-names: Alneberg | ||
| given-names: Johannes | ||
| - family-names: Wilm | ||
| given-names: Andreas | ||
| - family-names: Garcia | ||
| given-names: Maxime Ulysse | ||
| - family-names: Di Tommaso | ||
| given-names: Paolo | ||
| - family-names: Nahnsen | ||
| given-names: Sven | ||
| doi: 10.1038/s41587-020-0439-x | ||
| journal: nature biotechnology | ||
| start: 276 | ||
| end: 278 | ||
| title: "The nf-core framework for community-curated bioinformatics pipelines." | ||
| issue: 3 | ||
| volume: 38 | ||
| year: 2020 | ||
| url: https://dx.doi.org/10.1038/s41587-020-0439-x |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| { | ||
| "type": "message", | ||
| "attachments": [ | ||
| { | ||
| "contentType": "application/vnd.microsoft.card.adaptive", | ||
| "contentUrl": null, | ||
| "content": { | ||
| "\$schema": "http://adaptivecards.io/schemas/adaptive-card.json", | ||
| "msteams": { | ||
| "width": "Full" | ||
| }, | ||
| "type": "AdaptiveCard", | ||
| "version": "1.2", | ||
| "body": [ | ||
| { | ||
| "type": "TextBlock", | ||
| "size": "Large", | ||
| "weight": "Bolder", | ||
| "color": "<% if (success) { %>Good<% } else { %>Attention<%} %>", | ||
| "text": "nf-core/scrnaseq v${version} - ${runName}", | ||
| "wrap": true | ||
| }, | ||
| { | ||
| "type": "TextBlock", | ||
| "spacing": "None", | ||
| "text": "Completed at ${dateComplete} (duration: ${duration})", | ||
| "isSubtle": true, | ||
| "wrap": true | ||
| }, | ||
| { | ||
| "type": "TextBlock", | ||
| "text": "<% if (success) { %>Pipeline completed successfully!<% } else { %>Pipeline completed with errors. The full error message was: ${errorReport}.<% } %>", | ||
| "wrap": true | ||
| }, | ||
| { | ||
| "type": "TextBlock", | ||
| "text": "The command used to launch the workflow was as follows:", | ||
| "wrap": true | ||
| }, | ||
| { | ||
| "type": "TextBlock", | ||
| "text": "${commandLine}", | ||
| "isSubtle": true, | ||
| "wrap": true | ||
| } | ||
| ], | ||
| "actions": [ | ||
| { | ||
| "type": "Action.ShowCard", | ||
| "title": "Pipeline Configuration", | ||
| "card": { | ||
| "type": "AdaptiveCard", | ||
| "\$schema": "http://adaptivecards.io/schemas/adaptive-card.json", | ||
| "body": [ | ||
| { | ||
| "type": "FactSet", | ||
| "facts": [<% out << summary.collect{ k,v -> "{\"title\": \"$k\", \"value\" : \"$v\"}"}.join(",\n") %> | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| ] | ||
| } |
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