Support mapping an HGVS annotation to VariantCoordinates
#75
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We can also use variantvalidator.org REST API; this may be even better since it directly serves VCF coordinates, which are straightforward to translate into E.g. for curl -X 'GET' \
'https://rest.variantvalidator.org/VariantValidator/variantvalidator/hg38/NM_005912.3%3Ac.253A%3EG/mane_select?content-type=application%2Fjson' \
-H 'accept: application/json' |
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Add stubs for mapping an HGVS annotation to
VariantCoordinateusing Ensembl's REST API.We must implement
genophenocorr.preprocessing._vep.VepHgvsVariantCoordinateFinderstub and make the associated unit tests pass.See the stub for more information/guidance.
Closes #76
Resolves BIH-CEI/ERKER2Phenopackets/#178