Added PTPN11 analysis

[justaddcoffee]

Currently failing because of a problem finding NP ID in Uniprot

According to Ensembl, the canonical transcript of PTPN11 is ENST00000351677.7 which corresponds to transcript NM_002834.5 and protein NP_002825.3

When I run this cell:

from gpsea.model.genome import GRCh38
from gpsea.preprocessing import VVMultiCoordinateService, \
    configure_default_protein_metadata_service

txc_service = VVMultiCoordinateService(genome_build=GRCh38)
tx_coordinates = txc_service.fetch(PTPN11_transcript_id) 

pms = configure_default_protein_metadata_service()
protein_meta = pms.annotate(PTPN11_protein_id)

I get this error:

ValueError: Could not find an entry for NP_002825.3 in Uniprot response

Uniprot lists these as other NP IDs:

NP_001317366.1 NM_001330437.1 [Q06124-1]
NP_002825.3 NM_002834.4 [Q06124-2]
NP_542168.1 NM_080601.2 [Q06124-3]

But same problem with all of these NPs