updated tqdm to print files/sec instead of it/sec

[lnrekerle]

Individuals Processed: 100%|██████████| 337/337 [01:38<00:00, 3.43individuals/s]

This is what the bar should look like now.
This will close #241

[ielis]

We should probably use "individuals" as a unit. Phenopackets do not necessarily have to only come from a file. Take Phenopacket Store as an example. There is one ZIP archive that is open and the phenopacket data is read from the archive file on the fly..

[lnrekerle]

Oh! Yah, okay, should we do individual or patient? Since the start of the bar does say "Patients Created", using patient would make sense.

@ielis

[pnrobinson]

Please alway replace the word "patient" with the work "individual".
People with rare disease want this because individual captures better the fact that affected people have lives outside of being a patient (which is a role we all play when we go to the doctor, but is not our individual identity).

[lnrekerle]

@pnrobinson
That makes a lot of sense! How does this loading bar look then?
Individuals Processed: 100%|██████████| 337/337 [01:38<00:00, 3.43individuals/s]

[ielis]

@lnrekerle yes, the progress bar looks good!

[ielis]

So, the progress prompt still needs to be aligned with the prompt from the PR messages.

[ielis]

See the comment below.

[ielis]

Yes, this is it.