Skip to content

Commit

Permalink
Merge pull request #51 from monarch-initiative/KBG-NotebookUpdate
Browse files Browse the repository at this point in the history
Updated KBG to work with current structure
  • Loading branch information
pnrobinson committed Sep 20, 2023
2 parents b713cdf + a731885 commit 4578db2
Show file tree
Hide file tree
Showing 346 changed files with 2,733 additions and 10,878 deletions.
1,561 changes: 0 additions & 1,561 deletions notebooks/KBG/KBG_Martinez_PMID_36446582_CreatePhenopackets-v2.ipynb

This file was deleted.

601 changes: 193 additions & 408 deletions notebooks/KBG/KBG_Martinez_PMID_36446582_CreatePhenopackets.ipynb

Large diffs are not rendered by default.

3,355 changes: 2,199 additions & 1,156 deletions notebooks/KBG/KBG_Martinez_PMID_36446582_RunGenoPhenoCorr.ipynb

Large diffs are not rendered by default.

7,364 changes: 0 additions & 7,364 deletions notebooks/KBG/KBG_Martinez_PMID_36446582_RunGenoPhenoCorr_UPDATED.ipynb

This file was deleted.

Binary file not shown.
2 changes: 1 addition & 1 deletion notebooks/KBG/phenopackets/PMID_36446582_Alves_2019.json
Original file line number Diff line number Diff line change
Expand Up @@ -104,7 +104,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
2 changes: 1 addition & 1 deletion notebooks/KBG/phenopackets/PMID_36446582_Behnert_2018.json
Original file line number Diff line number Diff line change
Expand Up @@ -201,7 +201,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
2 changes: 1 addition & 1 deletion notebooks/KBG/phenopackets/PMID_36446582_Bianchi_2018.json
Original file line number Diff line number Diff line change
Expand Up @@ -183,7 +183,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
2 changes: 1 addition & 1 deletion notebooks/KBG/phenopackets/PMID_36446582_Bucerzan2020.json
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -144,7 +144,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -192,7 +192,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -137,7 +137,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -163,7 +163,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -159,7 +159,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -117,7 +117,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -150,7 +150,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -137,7 +137,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -159,7 +159,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -159,7 +159,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -140,7 +140,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -160,7 +160,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -159,7 +159,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -160,7 +160,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -122,7 +122,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -127,7 +127,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -144,7 +144,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -137,7 +137,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -159,7 +159,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -126,7 +126,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -112,7 +112,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -104,7 +104,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@
}
],
"metaData": {
"created": "2023-04-24T19:37:25.478348970Z",
"created": "2023-09-15T19:23:49.837050914Z",
"createdBy": "ORCID:0000-0003-2598-6622",
"resources": [
{
Expand Down
Loading

0 comments on commit 4578db2

Please sign in to comment.