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latest/_modules/genophenocorr/analysis/predicate/_all_predicates.html

@@ -241,7 +241,7 @@ <h1>Source code for genophenocorr.analysis.predicate._all_predicates</h1><div cl
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;query must be type string but was type </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">query</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
         <span class="nb">vars</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
         <span class="k">for</span> <span class="n">var</span> <span class="ow">in</span> <span class="n">patient</span><span class="o">.</span><span class="n">variants</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">var</span><span class="o">.</span><span class="n">variant_string</span><span class="si">}</span><span class="s2"> == </span><span class="si">{</span><span class="n">query</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
+            <span class="c1">#print(f&quot;{var.variant_string} == {query}&quot;)</span>
             <span class="k">if</span> <span class="n">var</span><span class="o">.</span><span class="n">variant_string</span> <span class="o">==</span> <span class="n">query</span><span class="p">:</span>
                 <span class="nb">vars</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">var</span><span class="p">)</span>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">vars</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>

latest/_modules/genophenocorr/preprocessing/_config.html

@@ -108,6 +108,7 @@ <h1>Source code for genophenocorr.preprocessing._config</h1><div class="highligh
 <span class="sd">    :param validation_runner: an instance of the validation runner.</span>
 <span class="sd">    :param cache_dir: path to the folder where we will cache the results fetched from the remote APIs or `None`</span>
 <span class="sd">     if the data should be cached in `.cache` folder in the current working directory.</span>
+<span class="sd">     In any case, the directory will be created if it does not exist (including non-existing parents).</span>
 <span class="sd">    :param variant_fallback: the fallback variant annotator to use if we cannot find the annotation locally.</span>
 <span class="sd">     Choose from ``{&#39;VEP&#39;}`` (just one fallback implementation is available at the moment).</span>
 <span class="sd">    :param protein_fallback: the fallback protein metadata annotator to use if we cannot find the annotation locally.</span>

latest/apidocs/genophenocorr.preprocessing.html

@@ -526,7 +526,8 @@
 <li><p><strong>hpo</strong> – a HPO instance.</p></li>
 <li><p><strong>validation_runner</strong> – an instance of the validation runner.</p></li>
 <li><p><strong>cache_dir</strong> – path to the folder where we will cache the results fetched from the remote APIs or <cite>None</cite>
-if the data should be cached in <cite>.cache</cite> folder in the current working directory.</p></li>
+if the data should be cached in <cite>.cache</cite> folder in the current working directory.
+In any case, the directory will be created if it does not exist (including non-existing parents).</p></li>
 <li><p><strong>variant_fallback</strong> – the fallback variant annotator to use if we cannot find the annotation locally.
 Choose from <code class="docutils literal notranslate"><span class="pre">{'VEP'}</span></code> (just one fallback implementation is available at the moment).</p></li>
 <li><p><strong>protein_fallback</strong> – the fallback protein metadata annotator to use if we cannot find the annotation locally.