Support mapping an HGVS annotation to VariantCoordinates
#121
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Initialize Python | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package | |
| run: | | |
| python3 -m pip install .[test,docs] | |
| - name: Run pytest tests | |
| run: | | |
| pytest | |
| - name: Run documentation tests | |
| run: | | |
| cd docs | |
| sphinx-apidoc --separate --module-first -d 2 -H "API reference" -o apidocs ../src/genophenocorr | |
| make doctest |