Merge pull request #55 from monarch-initiative/cohort_display #5
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| # Simple workflow for deploying static content to GitHub Pages | |
| name: Deploy documentation to GitHub Pages | |
| on: | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Runs on pushes targeting the main branch | |
| push: | |
| branches: [ main, develop ] | |
| jobs: | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # otherwise, you will fail to push refs to dest repo | |
| ref: main | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install library with docs dependencies | |
| run: | | |
| python3 -m pip install .[docs] | |
| - name: Generate examples and build documentation | |
| run: | | |
| ## Init the target folder. | |
| # We will put all site documentation there. | |
| mkdir -p gh-pages | |
| touch gh-pages/.nojekyll | |
| function build_docs { | |
| # The function will checkout a branch and build the Javadoc & documentation | |
| # into provided documentation directory. | |
| BRANCH=${1} | |
| DOCDIR=${2} | |
| git checkout ${BRANCH} | |
| git fetch | |
| git pull | |
| ## Init the target folder. | |
| # We will put all site documentation there. | |
| mkdir -p gh-pages/${DOCDIR} | |
| ## Build the docs | |
| # Generate the HTML pages and move the generated content into the target folder. | |
| printf "Building the %s documentation\n" ${DOCDIR} | |
| cd docs | |
| sphinx-apidoc --separate --module-first -d 2 -H "API reference" --follow-links -o apidocs ../src/genophenocorr | |
| # TODO - enable doctest when ready | |
| make html | |
| mv _build/html/* ../gh-pages/${DOCDIR} | |
| cd .. | |
| } | |
| # We store the docs for `main` in `stable` dir | |
| # TODO - enable when the docs make it into `main` | |
| #build_docs main stable | |
| # We store the docs for `development` in `latest` dir | |
| build_docs develop latest | |
| - name: Deploy documentation | |
| if: ${{ github.event_name == 'push' }} | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| force: true | |
| folder: gh-pages |