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up DD bounds #339

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Oct 5, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/Documenter.yml
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ jobs:
- name: Install documentation dependencies
run: sudo apt-get update && sudo apt-get install -y xorg-dev mesa-utils xvfb libgl1 freeglut3-dev libxrandr-dev libxinerama-dev libxcursor-dev libxi-dev libxext-dev
- name: Install pkgs dependencies
run: DISPLAY=:0 xvfb-run -s '-screen 0 1024x768x24' julia --project=docs -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()'
run: DISPLAY=:0 xvfb-run -s '-screen 0 1024x768x24' julia --project=docs -e 'using Pkg; Pkg.instantiate(); Pkg.precompile(); pkg"dev ."'
- name: Build and deploy
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/benchmark.yml
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
with:
version: 1
- name: Install dependencies
run: julia -e 'using Pkg; pkg"add PkgBenchmark [email protected]"'
run: julia -e 'using Pkg; pkg"add PkgBenchmark [email protected]; dev ."'
- name: Run benchmarks
run: julia -e 'using BenchmarkCI; BenchmarkCI.judge()'
- name: Post results
Expand Down
2 changes: 1 addition & 1 deletion Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ YAXArrayBase = "90b8fcef-0c2d-428d-9c56-5f86629e9d14"
[compat]
CFTime = "0.0, 0.1"
DataStructures = "0.17, 0.18"
DimensionalData = "0.24"
DimensionalData = "0.24, 0.25"
DiskArrayTools = "0.1"
DiskArrays = "0.3"
DocStringExtensions = "0.8, 0.9"
Expand Down
124 changes: 64 additions & 60 deletions docs/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -183,9 +183,9 @@ version = "1.0.5"

[[deps.CairoMakie]]
deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"]
git-tree-sha1 = "696e7931bd6f5c773418452cbe5fd241cb85ac2a"
git-tree-sha1 = "74384dc4aba2b377e22703e849154252930c434d"
uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
version = "0.10.9"
version = "0.10.11"

[[deps.Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
Expand Down Expand Up @@ -219,9 +219,9 @@ version = "0.4.0"

[[deps.ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
git-tree-sha1 = "d9a8f86737b665e15a9641ecbac64deef9ce6724"
git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.23.0"
version = "3.24.0"

[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
Expand Down Expand Up @@ -254,9 +254,9 @@ version = "0.3.0"

[[deps.Compat]]
deps = ["UUIDs"]
git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.9.0"
version = "4.10.0"
weakdeps = ["Dates", "LinearAlgebra"]

[deps.Compat.extensions]
Expand Down Expand Up @@ -358,25 +358,25 @@ version = "0.24.13"

[[deps.DiskArrayTools]]
deps = ["DiskArrays", "Interpolations", "IterTools", "OffsetArrays"]
git-tree-sha1 = "225732e17d8818d416b57a07b3a02763e72a0e01"
git-tree-sha1 = "b790ac256df1be83ce3e04bb64b27a272721cf46"
uuid = "fcd2136c-9f69-4db6-97e5-f31981721d63"
version = "0.1.6"
version = "0.1.8"

[[deps.DiskArrays]]
deps = ["OffsetArrays"]
git-tree-sha1 = "ff14e3ab4b618d33eca0ee32eb389aacb0b67330"
git-tree-sha1 = "7a6ada7a039841a8eac8fe22690d55b401f8b52c"
uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
version = "0.3.17"
version = "0.3.20"

[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.100"
version = "0.25.102"

[deps.Distributions.extensions]
DistributionsChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -503,9 +503,9 @@ version = "1.16.1"

[[deps.FilePathsBase]]
deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"]
git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12"
git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa"
uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
version = "0.9.20"
version = "0.9.21"

[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
Expand Down Expand Up @@ -607,9 +607,9 @@ version = "3.3.8+0"

[[deps.GLMakie]]
deps = ["ColorTypes", "Colors", "FileIO", "FixedPointNumbers", "FreeTypeAbstraction", "GLFW", "GeometryBasics", "LinearAlgebra", "Makie", "Markdown", "MeshIO", "ModernGL", "Observables", "PrecompileTools", "Printf", "ShaderAbstractions", "StaticArrays"]
git-tree-sha1 = "a92cc6b1fb1b6233818aab02e88293b07cf445e5"
git-tree-sha1 = "b46b637cf3e1945354e77c016f867198b829d2f6"
uuid = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
version = "0.8.9"
version = "0.8.11"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand All @@ -624,9 +624,9 @@ version = "0.4.1"

[[deps.GeoInterface]]
deps = ["Extents"]
git-tree-sha1 = "bb198ff907228523f3dee1070ceee63b9359b6ab"
git-tree-sha1 = "d53480c0793b13341c40199190f92c611aa2e93c"
uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
version = "1.3.1"
version = "1.3.2"

[[deps.GeoInterfaceRecipes]]
deps = ["GeoInterface", "RecipesBase"]
Expand Down Expand Up @@ -898,9 +898,9 @@ version = "2.2.10"

[[deps.JpegTurbo]]
deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"]
git-tree-sha1 = "327713faef2a3e5c80f96bf38d1fa26f7a6ae29e"
git-tree-sha1 = "d65930fa2bc96b07d7691c652d701dcbe7d9cf0b"
uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0"
version = "0.1.3"
version = "0.1.4"

[[deps.JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
Expand Down Expand Up @@ -1082,9 +1082,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[deps.LoggingExtras]]
deps = ["Dates", "Logging"]
git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91"
git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.2"
version = "1.0.3"

[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
Expand Down Expand Up @@ -1124,15 +1124,15 @@ version = "0.5.11"

[[deps.Makie]]
deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"]
git-tree-sha1 = "ecc334efc4a8a68800776b0d85ab7bb2fff63f7a"
git-tree-sha1 = "1d16d20279a145119899b4205258332f0fbeaa94"
uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
version = "0.19.9"
version = "0.19.11"

[[deps.MakieCore]]
deps = ["Observables"]
git-tree-sha1 = "1efb1166dd9398f2ccf6d728f896658c9c84733e"
deps = ["Observables", "REPL"]
git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4"
uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
version = "0.6.6"
version = "0.6.8"

[[deps.MakieTeX]]
deps = ["Cairo", "CairoMakie", "Colors", "DocStringExtensions", "Ghostscript_jll", "Glib_jll", "LaTeXStrings", "Makie", "Perl_jll", "Poppler_jll", "tectonic_jll"]
Expand Down Expand Up @@ -1179,9 +1179,9 @@ version = "0.4.10"

[[deps.MicrosoftMPI_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422"
git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5"
uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf"
version = "10.1.3+4"
version = "10.1.4+0"

[[deps.Missings]]
deps = ["DataAPI"]
Expand Down Expand Up @@ -1335,9 +1335,9 @@ version = "0.8.1+0"

[[deps.OpenMPI_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314"
git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
version = "4.1.5+0"
version = "4.1.6+0"

[[deps.OpenSSL]]
deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
Expand All @@ -1347,9 +1347,9 @@ version = "1.4.1"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e78db7bd5c26fc5a6911b50a47ee302219157ea8"
git-tree-sha1 = "ceeda72c9fd6bbebc4f4f598560789145a8b6c4c"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.10+0"
version = "3.0.11+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1381,9 +1381,9 @@ version = "10.42.0+0"

[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1"
git-tree-sha1 = "528664265c9c36b3ecdb6d721d47aaab52ddf267"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.17"
version = "0.11.24"

[[deps.PNGFiles]]
deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
Expand Down Expand Up @@ -1515,9 +1515,9 @@ version = "1.2.0"

[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1"
git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.0"
version = "1.4.1"

[[deps.PrettyTables]]
deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
Expand All @@ -1543,9 +1543,9 @@ version = "1.9.0"

[[deps.Proj]]
deps = ["CEnum", "CoordinateTransformations", "GeoFormatTypes", "GeoInterface", "NetworkOptions", "PROJ_jll"]
git-tree-sha1 = "100c0fd4e8e8d2130814307c8d231112ac6922fa"
git-tree-sha1 = "76ab3cbf876f3c859b6cc5817d8262809add3e13"
uuid = "c94c279d-25a6-4763-9509-64d165bea63e"
version = "1.5.0"
version = "1.7.0"

[[deps.QOI]]
deps = ["ColorTypes", "FileIO", "FixedPointNumbers"]
Expand All @@ -1555,9 +1555,9 @@ version = "1.0.0"

[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.8.2"
version = "2.9.1"

[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
Expand Down Expand Up @@ -1677,9 +1677,9 @@ version = "1.1.1"

[[deps.ShaderAbstractions]]
deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"]
git-tree-sha1 = "0d15c3e7b2003f4451714f08ffec2b77badc2dc4"
git-tree-sha1 = "db0219befe4507878b1a90e07820fed3e62c289d"
uuid = "65257c39-d410-5151-9873-9b3e5be5013e"
version = "0.3.0"
version = "0.4.0"

[[deps.SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
Expand Down Expand Up @@ -1792,9 +1792,9 @@ version = "0.1.1"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
git-tree-sha1 = "51621cca8651d9e334a659443a74ce50a3b6dfab"
git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.6.3"
version = "1.6.5"
weakdeps = ["Statistics"]

[deps.StaticArrays.extensions]
Expand All @@ -1818,9 +1818,9 @@ version = "1.7.0"

[[deps.StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.21"
version = "0.34.2"

[[deps.StatsFuns]]
deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
Expand Down Expand Up @@ -1881,10 +1881,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"

[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"]
git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec"
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.10.1"
version = "1.11.0"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
Expand All @@ -1909,9 +1909,9 @@ version = "2.1.1"

[[deps.TiffImages]]
deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
git-tree-sha1 = "8621f5c499a8aa4aa970b1ae381aae0ef1576966"
git-tree-sha1 = "7fd97bd1c5b1ff53a291cbd351d1d3d6ff4da5a5"
uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
version = "0.6.4"
version = "0.6.7"

[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
Expand Down Expand Up @@ -1954,15 +1954,19 @@ version = "0.4.1"

[[deps.WGLMakie]]
deps = ["Colors", "FileIO", "FreeTypeAbstraction", "GeometryBasics", "Hyperscript", "JSServe", "LinearAlgebra", "Makie", "Observables", "PNGFiles", "PrecompileTools", "RelocatableFolders", "ShaderAbstractions", "StaticArrays"]
git-tree-sha1 = "26e690019b85187838f122c980d590e334cc7e1a"
git-tree-sha1 = "9144b1c6a99bb3a55d056afc5f007465668241bf"
uuid = "276b4fcb-3e11-5398-bf8b-a0c2d153d008"
version = "0.8.13"
version = "0.8.15"

[[deps.WeightedOnlineStats]]
deps = ["LinearAlgebra", "MultivariateStats", "OnlineStats", "OnlineStatsBase", "Statistics", "StatsBase"]
git-tree-sha1 = "b2dba91e787e710881b57dd70c52948beb036e70"
deps = ["LinearAlgebra", "OnlineStats", "OnlineStatsBase", "Statistics", "StatsBase"]
git-tree-sha1 = "f80717cc4bc3699a8df24133203de46217811443"
uuid = "bbac0a1f-7c9d-5672-960b-c6ca726e5d5d"
version = "0.6.1"
version = "0.6.2"
weakdeps = ["MultivariateStats"]

[deps.WeightedOnlineStats.extensions]
PcaExt = "MultivariateStats"

[[deps.WidgetsBase]]
deps = ["Observables"]
Expand All @@ -1978,9 +1982,9 @@ version = "0.5.5"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4"
git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.10.4+0"
version = "2.11.5+0"

[[deps.XMLDict]]
deps = ["EzXML", "IterTools", "OrderedCollections"]
Expand Down Expand Up @@ -2082,7 +2086,7 @@ version = "0.6.1"
deps = ["CFTime", "DataStructures", "Dates", "DimensionalData", "DiskArrayTools", "DiskArrays", "Distributed", "DocStringExtensions", "Glob", "Interpolations", "IntervalSets", "IterTools", "Markdown", "OffsetArrays", "OnlineStats", "Optim", "OrderedCollections", "ParallelUtilities", "ProgressMeter", "Reexport", "Requires", "Statistics", "StatsBase", "Tables", "WeightedOnlineStats", "YAXArrayBase"]
path = ".."
uuid = "c21b50f5-aa40-41ea-b809-c0f5e47bfa5c"
version = "0.5.0"
version = "0.5.1"

[[deps.Zarr]]
deps = ["AWSS3", "Blosc", "CodecZlib", "DataStructures", "Dates", "DiskArrays", "HTTP", "JSON", "LRUCache", "OffsetArrays", "OpenSSL", "Pkg", "URIs"]
Expand Down
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