First try #12
Workflow file for this run
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| name: Test Pull Request | |
| on: [pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Testing with version ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python requirements | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest | |
| - name: Install Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'oracle' | |
| java-version: '21' | |
| - name: Install RNAFold | |
| run: | | |
| wget https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.4.tar.gz | |
| tar -zxvf ViennaRNA-2.6.4.tar.gz | |
| cd ViennaRNA-2.6.4 | |
| ./configure | |
| make | |
| sudo make install | |
| pwd | |
| - name: Run Tests | |
| run: | | |
| pwd | |
| ls | |
| echo "about to echo the path" | |
| echo "AHHHHHHHHHH" | |
| /home/runner/work/RNAFoldAssess/RNAFoldAssess/ViennaRNA-2.6.4/bin/RNAfold GUAUCCACGCGAGUAGCGUGGAUGCAAAAAAAUAAUAAUAUGGGUGUGGAACUACAGGCAGUAGGGGAAACCCUACUGAACUACCUGCCACACCCUAAGUUAUUAUUUUAC | |
| pip install -e . | |
| # pytest /home/runner/work/RNAFoldAssess/RNAFoldAssess/tests |