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use lock-free queue for hit_list #24

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tolot27 opened this issue Jun 26, 2014 · 1 comment

tolot27 commented Jun 26, 2014

Change hits_enter to be lock-free and void insert_sort. IMHO, sorting the hits at this time is not necessary.

Access to hits_sort is currently only in the alignment phase but is maybe only necessary once before output.

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tolot27 commented Jul 1, 2014

There is also the interessting FastFlow concept (see Efficient Smith-Waterman on Multi-core with FastFlow).

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