Skip to content

Issues: torognes/swipe

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 14 Closed
22 Open 14 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Show all descriptions and alignments with maximum score
#37 opened Aug 14, 2023 by krdav
support on ARM64
#36 opened Jul 14, 2022 by jianshu93
1
Now in homebrew
#33 opened Oct 5, 2018 by tseemann
1
compilation warnings with GCC 7 and GCC 8
#32 opened May 6, 2018 by frederic-mahe
1
Add matrix support for DNA/DNA ( blastn ) searches
#29 opened Aug 4, 2016 by rmhubley
1
some database functions return incorrect length
#27 opened Jul 29, 2014 by tolot27
let run the alignment thread(s) in parallel to the search threads
#25 opened Jun 26, 2014 by tolot27
use lock-free queue for hit_list
#24 opened Jun 26, 2014 by tolot27
1
Dual affine gap penalties enhancement
#23 opened May 23, 2014 by torognes
Improve checking of FASTA-formatted files and handle lines starting with # enhancement
#21 opened May 6, 2014 by torognes
1
Output results in SAM or BAM format enhancement
#19 opened Mar 27, 2014 by torognes
1
Use a FASTQ file as query input enhancement
#18 opened Mar 27, 2014 by torognes
2
mpiswipe won't run with some variants of MPI enhancement
#17 opened Mar 10, 2014 by torognes
@torognes
1
Documentation! enhancement
#15 opened Feb 13, 2014 by torognes
@torognes
Fallback to non-SIMD code if SIMD not present (or as an option) enhancement
#14 opened Feb 13, 2014 by torognes
@torognes
Show all significant alignments per sequence, not just the single best enhancement
#13 opened Feb 13, 2014 by torognes
Allow zero gap opening or gap extension penalty enhancement
#12 opened Feb 13, 2014 by torognes
@torognes
Optionally output the raw alignment score, not just the bit score enhancement
#11 opened Jan 15, 2014 by torognes
2
Add option to use the new sequence length adjustment statistics (FSC) in BLAST 2.2.26 and later enhancement
#8 opened Apr 30, 2013 by torognes
@torognes
Adapt to AVX2 enhancement
#6 opened Feb 19, 2013 by torognes
@torognes
1
Search with a query sequence profile enhancement
#5 opened Feb 19, 2013 by torognes
@torognes
Make BLAST compatible XML output format enhancement
#2 opened Feb 19, 2013 by torognes
ProTip! Updated in the last three days: updated:>2024-09-26.