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rcc

rcc #1319

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
schedule:
- cron: "10 0 * * *"
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref || github.sha }}-${{ github.base_ref || '' }}
cancel-in-progress: true
name: rcc
jobs:
rcc-smoke:
runs-on: ubuntu-latest
outputs:
sha: ${{ steps.commit.outputs.sha }}
name: "Smoke test: stock R"
# Begin custom: services
# End custom: services
steps:
- uses: actions/checkout@v4
- uses: ./.github/workflows/rate-limit
with:
token: ${{ secrets.GITHUB_TOKEN }}
- uses: ./.github/workflows/git-identity
- uses: ./.github/workflows/custom/before-install
if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
- uses: ./.github/workflows/install
with:
token: ${{ secrets.GITHUB_TOKEN }}
install-r: false
cache-version: rcc-smoke-2
needs: check
extra-packages: any::rcmdcheck any::roxygen2 r-lib/styler
- uses: ./.github/workflows/custom/after-install
if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
- uses: ./.github/workflows/update-snapshots
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
- uses: ./.github/workflows/style
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
- uses: ./.github/workflows/roxygenize
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
- id: commit
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
uses: ./.github/workflows/commit
- uses: ./.github/workflows/check
with:
results: ${{ runner.os }}-smoke-test
# Runs in a separate workflow, because it's using dev pkgdown
# which might bring in other dev dependencies
pkgdown:
needs: rcc-smoke
runs-on: ubuntu-latest
name: "pkgdown"
# Begin custom: services
# End custom: services
steps:
- uses: actions/checkout@v4
with:
ref: ${{ needs.rcc-smoke.outputs.sha }}
- uses: ./.github/workflows/rate-limit
with:
token: ${{ secrets.GITHUB_TOKEN }}
- uses: ./.github/workflows/git-identity
if: github.event_name == 'push'
- uses: ./.github/workflows/custom/before-install
if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
- uses: ./.github/workflows/install
with:
token: ${{ secrets.GITHUB_TOKEN }}
install-r: false
cache-version: pkgdown-1
needs: website
extra-packages: r-lib/pkgdown local::.
- uses: ./.github/workflows/custom/after-install
if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
- uses: ./.github/workflows/pkgdown-build
if: github.event_name != 'push'
- uses: ./.github/workflows/pkgdown-deploy
if: github.event_name == 'push'
# Windows checks can be run in parallel and independently
# when they alone take as long as the smoke and full tests combined.
# To achieve this, remove the "needs:" element below.
rcc-windows:
# Begin custom: early run
needs: rcc-smoke
# End custom: early run
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }}
# Begin custom: services
# End custom: services
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
# Use 3.6 to trigger usage of RTools35
- {os: windows-latest, r: '3.6'}
steps:
- uses: actions/checkout@v4
with:
ref: ${{ needs.rcc-smoke.outputs.sha }}
- uses: ./.github/workflows/custom/before-install
if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
- uses: ./.github/workflows/install
with:
r-version: ${{ matrix.config.r }}
cache-version: rcc-windows-1
token: ${{ secrets.GITHUB_TOKEN }}
needs: check
- uses: ./.github/workflows/custom/after-install
if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
- uses: ./.github/workflows/update-snapshots
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
- uses: ./.github/workflows/check
with:
results: ${{ runner.os }}-r${{ matrix.config.r }}
rcc-full:
needs: rcc-smoke
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }}
# Begin custom: services
# End custom: services
strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'release'}
# Use older ubuntu to maximise backward compatibility
- {os: ubuntu-22.04, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-22.04, r: 'release', covr: true, desc: 'with covr'}
- {os: ubuntu-22.04, r: 'oldrel-1'}
# Begin custom: R 3.6
- {os: ubuntu-22.04, r: 'oldrel-2'}
# End custom: R 3.6
# Begin custom: R 3.5
- {os: ubuntu-22.04, r: 'oldrel-3'}
# End custom: R 3.5
# Begin custom: R 3.4
- {os: ubuntu-22.04, r: 'oldrel-4'}
# End custom: R 3.4
# Begin custom: matrix elements
# End custom: matrix elements
steps:
- uses: actions/checkout@v4
with:
ref: ${{ needs.rcc-smoke.outputs.sha }}
- uses: ./.github/workflows/custom/before-install
if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
- uses: ./.github/workflows/install
with:
r-version: ${{ matrix.config.r }}
cache-version: rcc-full-1
token: ${{ secrets.GITHUB_TOKEN }}
needs: check
- uses: ./.github/workflows/custom/after-install
if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
- uses: ./.github/workflows/update-snapshots
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
- uses: ./.github/workflows/check
with:
results: ${{ runner.os }}-r${{ matrix.config.r }}
suggests-matrix:
runs-on: ubuntu-22.04
outputs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
name: Collect suggests deps
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: ./.github/workflows/rate-limit
with:
token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@v2
with:
install-r: false
use-public-rspm: true
- id: set-matrix
uses: ./.github/workflows/dep-matrix-suggests
check-matrix:
runs-on: ubuntu-22.04
needs: suggests-matrix
name: Check deps
if: ${{ needs.matrix.outputs.matrix != '' }}
steps:
- name: Install json2yaml
run: |
sudo npm install -g json2yaml
- name: Check matrix definition
run: |
matrix='${{ needs.matrix.outputs.matrix }}'
echo $matrix
echo $matrix | jq .
echo $matrix | json2yaml
rcc-suggests:
needs:
- suggests-matrix
- rcc-smoke
runs-on: ubuntu-22.04
name: Without ${{ matrix.package }}
if: ${{ needs.suggests-matrix.outputs.matrix != '' }}
# Begin custom: services
# End custom: services
strategy:
fail-fast: false
matrix: ${{fromJson(needs.suggests-matrix.outputs.matrix)}}
steps:
- uses: actions/checkout@v4
- uses: ./.github/workflows/custom/before-install
if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
- uses: ./.github/workflows/install
with:
install-r: false
cache-version: rcc-dev-${{ matrix.package }}-1
needs: check
extra-packages: "any::rcmdcheck any::remotes ."
token: ${{ secrets.GITHUB_TOKEN }}
- name: Remove ${{ matrix.package }} and all strong dependencies
run: |
pkg <- "${{ matrix.package }}"
pkgs <- tools::package_dependencies(pkg, reverse = TRUE)[[1]]
installed <- rownames(utils::installed.packages())
to_remove <- c(pkg, intersect(pkgs, installed))
print(to_remove)
remove.packages(to_remove)
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- uses: ./.github/workflows/custom/after-install
if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
- name: Define _R_CHECK_FORCE_SUGGESTS_
run: |
cat('_R_CHECK_FORCE_SUGGESTS_=false\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE)
shell: Rscript {0}
- name: Must allow NOTEs, even with _R_CHECK_FORCE_SUGGESTS_
run: |
if (Sys.getenv("RCMDCHECK_ERROR_ON") %in% c("", "note")) {
cat('RCMDCHECK_ERROR_ON="warning"\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE)
}
shell: Rscript {0}
- name: Check env vars
run: |
print(Sys.getenv('_R_CHECK_FORCE_SUGGESTS_'))
print(Sys.getenv('RCMDCHECK_ERROR_ON'))
shell: Rscript {0}
- uses: ./.github/workflows/check
with:
results: ${{ matrix.package }}