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Python script the parses FASTA sequences and get ProtParam Properties

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tencerjo/FASTA-Parser-and-ProtParam-Tool

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Built on Anaconda 2.6.0, Python 3.11.7

This FASTA Parser tools script looks for text starting with ">" and grabs the amino acid sequence below it until two line breaks are detected and then looks for the next > with the sequence name.

The v0_5 script will take a text file the user edits in the code.

The v0_54 script will search for a .fasta file in a dir input by the user.

The script then uses BioPython to calculate various biochemical properties and writes them to a csv file along with the sequence name, original sequence, and the sequence with an appended C-terminus sequence (used for biochemical calculation) % Charged Amino Acids % Hydrophobic Amino Acids Charge at pH 7 Molecular Extinction Coefficient Oxidized Abs 0.1% Oxidized (Molecular Extinction Coefficient Oxidized / Molecular Weight) Isoelectric Point Molecular Weight in daltons

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Python script the parses FASTA sequences and get ProtParam Properties

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