Related to issues #2 #3

sct-pipeline · Jul 23, 2024 · ac8bfed · ac8bfed
1 parent 755439d
commit ac8bfed
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/process_data.sh b/scripts/process_data.sh
@@ -49,7 +49,7 @@ cd ${SUBJECT_SESSION}/anat/
 SUBJECT="${SUBJECT}_${SESSION}"
 
 # T1 image file name
-T1_image=$(find . -type f -name "*_MPRAGE.nii.gz" -print | head -n 1)
+T1_image=$(find . -type f -name "*_UNIT1.nii.gz" -print | head -n 1)
 
 # Contrast agnostic segmentation
 sct_deepseg -i "$T1_image" -task seg_sc_contrast_agnostic -o "${T1_image%.nii.gz}_seg.nii.gz" -qc ${PATH_QC} -qc-subject ${SUBJECT}