Merge pull request #545 from ropensci/dev

rgbif 3.7.3

DESCRIPTION

@@ -8,7 +8,7 @@ Description: A programmatic interface to the Web Service methods
     retrieving information on data providers, getting species occurrence
     records, getting counts of occurrence records, and using the GBIF
     tile map service to make rasters summarizing huge amounts of data.
-Version: 3.7.2.5
+Version: 3.7.3
 License: MIT + file LICENSE
 Authors@R: c(
     person("Scott", "Chamberlain", role = "aut", comment = c(ORCID="0000-0003-1444-9135")),

NEWS.md

@@ -1,3 +1,24 @@
+rgbif 3.7.3
+===========
+
+### NEW FEATURES
+
+* Added missing search parameters for `occ_data()` and `occ_search()` (#530) 
+* Added missing `occ_download()` terms to key lookup (#541)
+* Support for identifying "gridded datasets" with experimental API using `dataset_gridded()` (#516)
+* Look up the datasets in a GBIF network with `network_constituents()` (#527)
+* Added support for using GBIF experimental reverse geocoding API `gbif_geocode()` (#521)
+
+### DEPRECATED
+
+* `networks()` is deprecated and called `network()` instead. (#527)
+* `parsenames()` is deprecated and called `name_parse()` for better alignment
+with other `name_*` functions. (#504)
+
+### BUG FIXES
+
+* `occ_search` fixed bug related to networkKey in the column names (#524)
+
 rgbif 3.7.2
 ===========
 

R/occ_download.R

@@ -7,7 +7,7 @@
 #' `pred*` functions (see [download_predicate_dsl]). If you use this, don't
 #' use `body` parameter.
 #' @param body if you prefer to pass in the payload yourself, use this
-#' parameter. if use this, don't pass anythig to the dots. accepts
+#' parameter. If you use this, don't pass anything to the dots. Accepts
 #' either an R list, or JSON. JSON is likely easier, since the JSON
 #' library \pkg{jsonlite} requires that you unbox strings that shouldn't
 #' be auto-converted to arrays, which is a bit tedious for large queries.

codemeta.json

@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/ropensci/rgbif",
   "issueTracker": "https://github.com/ropensci/rgbif/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "3.7.2",
+  "version": "3.7.3",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -394,7 +394,7 @@
   "applicationCategory": "Biodiversity",
   "isPartOf": "https://ropensci.org",
   "keywords": ["GBIF", "specimens", "API", "web-services", "occurrences", "species", "taxonomy", "gbif", "api", "data", "biodiversity", "rstats", "r", "spocc", "r-package", "lifewatch", "oscibio"],
-  "fileSize": "9631.335KB",
+  "fileSize": "310689.195KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -438,7 +438,7 @@
       ],
       "name": "rgbif: Interface to the Global Biodiversity Information Facility API",
       "url": "https://CRAN.R-project.org/package=rgbif",
-      "description": "R package version 3.7.2"
+      "description": "R package version 3.7.3"
     },
     {
       "@type": "ScholarlyArticle",

cran-comments.md

@@ -1,8 +1,8 @@
 ## Test environments
 
 * local windows, R 4.1.2
-* local macOS 11.6.3 (GitHub Actions), R 4.1.2
-* ubuntu 18.04 (on GitHub Actions), R 4.1.2
+* local macOS 11.6.3 (GitHub Actions), R 4.2.1
+* ubuntu 18.04 (on GitHub Actions), R 4.2.1
 
 ## R CMD check results
 
@@ -16,7 +16,7 @@
 
 Hello,
 
-This version fixes a few bugs and dependency problems. 
+This version adds new features and bug fixes. 
 
 Thanks!
 John Waller

tests/fixtures/datasets_metadata.yml

@@ -20,5 +20,5 @@ http_interactions:
       encoding: UTF-8
       file: no
       string: '[{"key":657,"datasetKey":"a6998220-7e3a-485d-9cd6-73076bd85657","type":"EML","createdBy":"eml-pusher.gbif.org","modifiedBy":"eml-pusher.gbif.org","created":"2013-10-24T11:23:15.236+00:00","modified":"2013-10-24T11:23:15.236+00:00"}]'
-  recorded_at: 2022-07-12 12:28:09 GMT
+  recorded_at: 2022-09-02 09:43:03 GMT
   recorded_with: vcr/1.0.2, webmockr/0.8.0

tests/fixtures/datasets_single.yml

@@ -23,8 +23,8 @@ http_interactions:
         - List Aves Argentina Observations","description":"Extract of bird observations
         from Worldbirds - List Aves Argentina","language":"eng","citation":{"text":"Fisher
         I (2013). Worldbirds - List Aves Argentina Observations. Royal Society for
-        the Protection of Birds. Occurrence dataset accessed via GBIF.org on 2022-07-12.","citationProvidedBySource":false},"contactsCitation":[{"key":22898,"abbreviatedName":"Fisher
-        I","firstName":"Ian","lastName":"Fisher","roles":["METADATA_AUTHOR","ORIGINATOR"],"userId":[]}],"rights":"not-for-profit
+        the Protection of Birds. Occurrence dataset accessed via GBIF.org on 2022-09-02.","citationProvidedBySource":false},"contactsCitation":[{"key":22898,"abbreviatedName":"Fisher
+        I","firstName":"Ian","lastName":"Fisher","roles":["ORIGINATOR","METADATA_AUTHOR"],"userId":[]}],"rights":"not-for-profit
         use only","lockedForAutoUpdate":false,"createdBy":"registry-migration.gbif.org","modifiedBy":"eml-pusher.gbif.org","created":"2013-08-13T10:20:48.000+00:00","modified":"2013-10-24T11:23:15.303+00:00","deleted":"2013-11-04T10:26:06.925+00:00","contacts":[{"key":22898,"type":"ORIGINATOR","primary":true,"userId":[],"firstName":"Ian","lastName":"Fisher","position":[],"email":["[email protected]"],"phone":["00441223277200"],"homepage":[],"organization":"BirdLife
         International","address":["Wellbrook Court, Girton Road"],"city":"Cambridge","postalCode":"CB3
         0NA","createdBy":"eml-pusher.gbif.org","modifiedBy":"eml-pusher.gbif.org","created":"2013-10-24T11:23:15.249+00:00","modified":"2013-10-24T11:23:15.249+00:00"},{"key":22899,"type":"METADATA_AUTHOR","primary":true,"userId":[],"firstName":"Ian","lastName":"Fisher","position":[],"email":["[email protected]"],"phone":["00441223277200"],"homepage":[],"organization":"BirdLife
@@ -34,5 +34,5 @@ http_interactions:
         1JD","createdBy":"eml-pusher.gbif.org","modifiedBy":"eml-pusher.gbif.org","created":"2013-10-24T11:23:15.256+00:00","modified":"2013-10-24T11:23:15.256+00:00"},{"key":22901,"type":"ADMINISTRATIVE_POINT_OF_CONTACT","primary":true,"userId":[],"firstName":"Ian","lastName":"Fisher","position":[],"email":["[email protected]"],"phone":["00441223277200"],"homepage":[],"organization":"BirdLife
         International","address":["Wellbrook Court, Girton Road"],"city":"Cambridge","province":"Cambridgeshire","postalCode":"CB3
         0NA","createdBy":"eml-pusher.gbif.org","modifiedBy":"eml-pusher.gbif.org","created":"2013-10-24T11:23:15.258+00:00","modified":"2013-10-24T11:23:15.258+00:00"}],"endpoints":[{"key":16743,"type":"EML","url":"http://78.31.105.84:8080/ipt-2.0.4/eml.do?r=argentina","createdBy":"registry-migration.gbif.org","modifiedBy":"registry-migration.gbif.org","created":"2013-08-13T10:20:48.000+00:00","modified":"2013-09-10T15:06:25.000+00:00","machineTags":[]},{"key":16744,"type":"DWC_ARCHIVE","url":"http://78.31.105.84:8080/ipt-2.0.4/archive.do?r=argentina","createdBy":"registry-migration.gbif.org","modifiedBy":"registry-migration.gbif.org","created":"2013-08-13T10:20:48.000+00:00","modified":"2013-09-10T15:06:25.000+00:00","machineTags":[]}],"machineTags":[],"tags":[],"identifiers":[{"key":13537,"type":"GBIF_PORTAL","identifier":"15032","createdBy":"registry-migration.gbif.org","created":"2013-08-13T14:31:26.000+00:00"}],"comments":[],"bibliographicCitations":[],"curatorialUnits":[],"taxonomicCoverages":[],"geographicCoverages":[{"description":"Argentina","boundingBox":{"minLatitude":-90.0,"maxLatitude":90.0,"minLongitude":-180.0,"maxLongitude":180.0,"globalCoverage":true}}],"temporalCoverages":[{"@type":"range","start":"1900-01-01T00:00:00.001+00:00","end":"2013-12-31T00:00:00.001+00:00"}],"keywordCollections":[],"countryCoverage":[],"collections":[],"dataDescriptions":[],"dataLanguage":"eng","pubDate":"2013-09-10T00:00:00.000+00:00","license":"unspecified"}'
-  recorded_at: 2022-07-12 12:28:08 GMT
+  recorded_at: 2022-09-02 09:43:03 GMT
   recorded_with: vcr/1.0.2, webmockr/0.8.0

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@@ -102,10 +102,10 @@ http_interactions:
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@@ -364,9 +364,9 @@ http_interactions:
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-  recorded_at: 2022-07-12 12:28:19 GMT
+  recorded_at: 2022-09-02 09:43:11 GMT
   recorded_with: vcr/1.0.2, webmockr/0.8.0

tests/fixtures/gbif_citation_downloadkey.yml

@@ -32,5 +32,5 @@ http_interactions:
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-  recorded_at: 2022-07-12 12:28:19 GMT
+  recorded_at: 2022-09-02 09:43:11 GMT
   recorded_with: vcr/1.0.2, webmockr/0.8.0