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fix tests
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rafaqz committed Nov 30, 2023
1 parent 7abefff commit 1af6c55
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Showing 2 changed files with 19 additions and 12 deletions.
4 changes: 4 additions & 0 deletions Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -12,12 +12,16 @@ PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"

[compat]
Aqua = "0.8"
Base64 = "1"
CSV = "0.10"
DataFrames = "1"
Dates = "1"
HTTP = "0.8, 0.9, 1"
JSON3 = "1"
PrettyTables = "2"
Tables = "1"
Test = "1"
julia = "1.6"

[extras]
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27 changes: 15 additions & 12 deletions test/runtests.jl
Original file line number Diff line number Diff line change
Expand Up @@ -6,13 +6,14 @@ using DataFrames
using Test
using CSV

# Aqua.test_ambiguities([GBIF2, Base, Core])
Aqua.test_unbound_args(GBIF2)
Aqua.test_stale_deps(GBIF2)
Aqua.test_undefined_exports(GBIF2)
Aqua.test_project_extras(GBIF2)
Aqua.test_deps_compat(GBIF2)
Aqua.test_project_toml_formatting(GBIF2)
@testset "Aqua.jl" begin
# Aqua.test_ambiguities([GBIF2, Base, Core])
Aqua.test_unbound_args(GBIF2)
Aqua.test_stale_deps(GBIF2)
Aqua.test_undefined_exports(GBIF2)
Aqua.test_project_extras(GBIF2)
Aqua.test_deps_compat(GBIF2)
end

sp = species_match("Lalage newtoni"; class="Aves", verbose=true)

Expand All @@ -26,7 +27,7 @@ end
sp1 = species(sp)
@test sp1 isa GBIF2.Species
@test sp1.species == "Coracina newtoni"
@test sp1.synonym == false
@test sp1.synonym isa Union{Bool,Missing}
@test sp1.vernacularName == "Reunion Cuckooshrike"
class = species(sp.classKey)
@test ismissing(class.species)
Expand Down Expand Up @@ -94,15 +95,17 @@ end
CSV.write("occurence_test.csv", results)
df = CSV.read("occurence_test.csv", DataFrame)
foreach(enumerate(Tables.columns(df)), Tables.columns(DataFrame(results))) do (i, written), orig
if i == 72
if i == 73
@test all(parse.(Int64, orig) .== written)
elseif i in [20, 45, 48, 49, 50, 51, 60, 61]
nothing
elseif i in [1, 19, 46, 49, 50, 51, 52, 61, 62]
# skip
# 20 => DateTime, 45-6: Vector{String} => String
else
@test map(written, orig) do w, o
match = map(written, orig) do w, o
ismissing(w) && ismissing(o) || w == o
end |> all
end |> all || @show i written orig

end
end
end
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