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Use latest GHA workflows #710

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Aug 5, 2024
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25 changes: 13 additions & 12 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,9 @@ on:
pull_request:
branches: [main, master]

name: R-CMD-check
name: R-CMD-check.yaml

permissions: read-all

jobs:
R-CMD-check:
Expand All @@ -24,25 +26,23 @@ jobs:
config:
- {os: macos-latest, r: 'release'}

- {os: windows-latest, r: 'devel'}
- {os: windows-latest, r: 'next'}
- {os: windows-latest, r: 'release'}
# use 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: '4.1'}
# use 4.0 or 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: 'oldrel-4'}

- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

Expand All @@ -60,3 +60,4 @@ jobs:
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
8 changes: 5 additions & 3 deletions .github/workflows/pkgdown.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,9 @@ on:
types: [published]
workflow_dispatch:

name: pkgdown
name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
Expand All @@ -23,7 +25,7 @@ jobs:
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

Expand All @@ -49,7 +51,7 @@ jobs:

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.4.1
uses: JamesIves/github-pages-deploy-action@v4.5.0
with:
clean: false
branch: gh-pages
Expand Down
12 changes: 9 additions & 3 deletions .github/workflows/pr-commands.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,9 @@ on:
issue_comment:
types: [created]

name: Commands
name: pr-commands.yaml

permissions: read-all

jobs:
document:
Expand All @@ -13,8 +15,10 @@ jobs:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
Expand Down Expand Up @@ -50,8 +54,10 @@ jobs:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
Expand Down
23 changes: 17 additions & 6 deletions .github/workflows/test-coverage.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,9 @@ on:
pull_request:
branches: [main, master]

name: test-coverage
name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
Expand All @@ -15,36 +17,45 @@ jobs:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
extra-packages: any::covr, any::xml2
needs: coverage

- name: Test coverage
run: |
covr::codecov(
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
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