initial commit

.flake8

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+[flake8]
+max-line-length = 100

.github/workflows/docs.yaml

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+name: Deploy docs
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  docs:
+    name: Deploy docs
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.10.x"
+
+      - name: Upgrade pip
+        run: |
+          pip install -U pip poetry
+
+      - name: Install package and doc dependencies
+        run: |
+          poetry install
+
+      - name: Generate docs
+        run: |
+          poetry run docs
+
+      - name: Deploy docs
+        uses: JamesIves/[email protected]
+        with:
+          branch: gh-pages
+          folder: docs/fhir_utils

.github/workflows/lint.yaml

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+name: CI - Lint
+
+on:
+  push:
+
+jobs:
+  lint:
+    name: ${{ matrix.os }}${{ matrix.arch }} - Python ${{ matrix.python-version }} - lint
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        arch: [x64]
+        python-version: ["3.10.x"]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: ${{ matrix.arch }}
+
+      - name: Set up Poetry and upgrade pip
+        run: |
+          pip install -U pip poetry
+
+      - name: Install this package
+        run: |
+          poetry install
+
+      - name: Run tests
+        run: |
+          poetry run lint

.github/workflows/tests.yaml

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+name: CI - Tests
+
+on:
+  push:
+
+jobs:
+  tests:
+    name: ${{ matrix.os }}${{ matrix.arch }} - Python ${{ matrix.python-version }} - tests
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        arch: [x64]
+        python-version: ["3.10.x"]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: ${{ matrix.arch }}
+
+      - name: Set up Poetry and upgrade pip
+        run: |
+          pip install -U pip poetry
+
+      - name: Install this package
+        run: |
+          poetry install
+
+      - name: Run tests
+        run: |
+          poetry run test

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# VS Code
+.vscode/

.pre-commit-config.yaml

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+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.2.0
+    hooks:
+    - id: check-added-large-files # prevents adding large files
+    - id: detect-private-key # detects private keys
+    - id: fix-byte-order-marker # fixes BOM
+    - id: fix-encoding-pragma # fixes encoding pragma
+    - id: no-commit-to-branch # prevents committing to protected branches
+    - id: trailing-whitespace # prevents trailing whitespace
+-   repo: https://github.com/psf/black
+    rev: 22.3.0
+    hooks:
+    -   id: black
+        language_version: python3.10
+        exclude: 'pipelines\/\{\{cookiecutter\.project_name\}\}.*'
+-   repo: https://github.com/PyCQA/flake8
+    rev: 4.0.1
+    hooks:
+    - id: flake8