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pggb 0.4.0 - Pasticcino
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@AndreaGuarracino AndreaGuarracino released this 09 Jul 08:25
· 384 commits to master since this release
v0.4.0
99b77cc
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Learn about vigilant mode.

This introduces:

  • temporary directory management (#197);
  • improvements of the alignments (#195, #198);
  • samtools, fastix, igraph, pycairo, and pafplot in the docker/singularity image (#204);
  • better management of the -r/--resume flag (#205);
  • great improvement in graph normalization by replacing abPOA with SPOA, running it in local mode (#207). This resolves the SNV arrays introduced during the smoothing;
  • abPOA/SPOA selection (#209);
  • variant decomposition with vcfbub and vcfwave (#211)
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