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    15 repositories

    • MAPseeker

      Public
      Software for analyzing multiplexed SHAPE/DMS experiments (MAP-seq) and multiplexed •OH cleavage analysis (MOHCA-seq).
      C++
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • M2seq

      Public
      Analysis of 2D signal in mutate-and-map sequencing data
      MATLAB
      •
      MIT License
      •2•2•0•0•Updated May 11, 2024May 11, 2024

    • RDATKit

      Public
      RNA Data (RDAT) read/write scripts
      Python
      •
      MIT License
      •5•3•7•2•Updated Apr 26, 2024Apr 26, 2024

    • RiboDraw

      Public
      Semiautomated layout of RNA tertiary structure diagrams
      Promela
      •
      MIT License
      •4•8•31•0•Updated Feb 3, 2024Feb 3, 2024

    • HiTRACE

      Public
      High Throughput Robust Analysis of Capillary Electrophoresis
      MATLAB
      •
      Other
      •3•5•3•1•Updated Nov 22, 2020Nov 22, 2020

    • REEFFIT

      Public
      The RNA Ensemble Extraction From Footprinting Insights Technique
      Python
      •
      Other
      •1•1•0•1•Updated Jan 25, 2020Jan 25, 2020

    • LIFFT

      Public
      LIkelihood-based Fits of Folding Transitions
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 1, 2020Jan 1, 2020

    • Biers

      Public
      Basic Inference Engine for RNA Structure
      MATLAB
      •
      MIT License
      •2•1•1•1•Updated Jan 1, 2020Jan 1, 2020

    • RiboVis

      Public
      Favorite RNA/protein viewing scripts from the Das lab
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 24, 2019Dec 24, 2019

    • SAFA

      Public
      Semi-Automated Footprinting Analysis
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 3, 2018Jun 3, 2018

    • ribokit.github.io

      Public
      RiboKit GitHub pages
      CSS
      •1•1•0•0•Updated Apr 3, 2018Apr 3, 2018

    • RiboPaint

      Public
      Color RNA Secondary Structure Diagrams
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2017Nov 19, 2017

    • ribokit-Jekyll-theme

      Public
      GitHub Pages Theme: RiboKit
      CSS
      •1•0•0•0•Updated Jun 23, 2017Jun 23, 2017

    • ribokit-Sphinx-theme

      Public
      GitHub Pages Theme: RiboKit
      CSS
      •1•1•0•0•Updated Jun 23, 2017Jun 23, 2017

    • RiboBase-inactive

      Public archive
      Python
      •0•0•0•0•Updated Apr 12, 2016Apr 12, 2016