Repositories list

• gdc-docs

  Public
  Official repository for GDC User Guides in Markdown format

  JavaScript

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  Apache License 2.0

  •45•68•2•15•Updated Aug 15, 2024Aug 15, 2024

• lexevs

  Public
  The LexEVS Terminology Service.

  Logos

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  Other

  •21•13•0•8•Updated Feb 2, 2024Feb 2, 2024

• nci-metathesaurus-browser

  Public
  The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus, a biomedical terminology database that maps terms from more than 70 terminology sources into some 1.5 million biomedical concepts.

  Java

  •

  Other

  •7•6•0•1•Updated Dec 4, 2023Dec 4, 2023

• lexevs-service

  Public
  A CTS2 Framework Service Plugin based on LexEVS

  Java

  •

  Other

  •9•6•0•9•Updated Apr 15, 2023Apr 15, 2023

• lexevs-remote

  Public
  A remote (RMI) access wrapper around LexEVS.

  Java

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  Other

  •9•1•1•0•Updated Mar 18, 2022Mar 18, 2022

• lexevs-grid

  Public archive
  caGrid Analytical and Data services for LexEVS.

  Java

  •

  Other

  •2•1•0•0•Updated Apr 8, 2021Apr 8, 2021

• CTAT_testkit

  Public archive
  small testkit for checking CTAT module executions

  Makefile

  •0•0•0•0•Updated Apr 9, 2019Apr 9, 2019

• cadsr-sentinel

  Public archive
  The caDSR Sentinel tool allows users to create and manage Alert Definitions for content in the caDSR

  Java

  •

  Other

  •2•0•0•1•Updated Apr 8, 2019Apr 8, 2019

• BEMT

  Public archive
  Biobank Economic Modeling Tool

  Groovy

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  BSD 3-Clause "New" or "Revised" License

  •3•0•0•0•Updated Mar 21, 2019Mar 21, 2019

• ctat-genome_guided_reconstruction

  Public archive
  Use genome-guided reconstruction of transcripts

  Python

  •0•0•0•0•Updated Mar 8, 2019Mar 8, 2019

• docker-ctat-galaxy

  Public archive
  Galaxy Docker build for Trinity CTAT tools

  Python

  •1•1•0•0•Updated Nov 15, 2018Nov 15, 2018

• Trinity_CTAT_galaxy

  Public archive
  Files needed for Galaxy tools used to run Trinity_CTAT workflows.

  JavaScript

  •5•3•0•1•Updated Nov 14, 2018Nov 14, 2018

• ctat-metagenomics

  Public archive
  Python

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  Other

  •0•3•0•0•Updated Jul 23, 2018Jul 23, 2018

• annotation-and-image-markup

  Public archive
  Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.

  C++

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  Other

  •26•37•1•2•Updated Apr 5, 2018Apr 5, 2018

• caarray

  Public archive
  caArray is a web-based application supporting the storage, annotation, and sharing of microarray data.

  Mathematica

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  Other

  •1•2•0•0•Updated Feb 20, 2018Feb 20, 2018

• cabio

  Public archive
  caBIO (cancer Bioinformatics Infrastructure Objects) is a resource for accessing molecular annotations from curated data sources.

  JavaScript

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  Other

  •3•2•0•0•Updated Feb 13, 2018Feb 13, 2018

• caintegrator

  Public archive
  caIntegrator brings together clinical, microarray and medical imaging data for integrative data query and analysis.

  Java

  •

  Other

  •0•2•0•0•Updated Feb 13, 2018Feb 13, 2018

• camod

  Public archive
  The cancer models database (caMOD) provides information about animal models for human cancer to the public research community.

  Java

  •

  Other

  •1•1•0•0•Updated Feb 13, 2018Feb 13, 2018

• calims

  Public archive
  caLIMS is a Laboratory Information Management System (LIMS) that tracks a complete laboratory workflow to generate experimental results for data repositories or data management services.

  JavaScript

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  Other

  •0•1•0•0•Updated Feb 13, 2018Feb 13, 2018

• Cancer-Research-Data-Commons-Framework-Documentation

  Public archive
  Repository of documentation and technical artifacts related to the NCI CRDC

  0•0•0•0•Updated Jan 24, 2018Jan 24, 2018

• catissue-core

  Public archive
  caTissue Suite is a modular, open-source, specimen inventory and tracking system.

  Java

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  Other

  •55•8•0•1•Updated Aug 21, 2017Aug 21, 2017

• nci-diff-CDISC

  Public archive
  diff specific for CDISC reports

  Java

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  BSD 3-Clause "New" or "Revised" License

  •8•3•0•2•Updated Jun 22, 2017Jun 22, 2017

• cananolab

  Public archive
  caNanoLab is a web-based portal designed to capture nanotechnology data.

  Java

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  Other

  •6•3•0•0•Updated May 26, 2017May 26, 2017

• automation

  Public archive
  Created as per request NCI-RITM0065579 as part of SVN to GitHub migration

  JavaScript

  •0•0•0•0•Updated May 18, 2017May 18, 2017

• commonlibrary

  Public archive
  Created as per request NCI-RITM0065579

  0•0•0•0•Updated May 18, 2017May 18, 2017

• bioconductor

  Public archive
  Java

  •0•0•0•0•Updated Apr 13, 2017Apr 13, 2017

• cbiit-ahp3-software

  Public archive
  Ruby

  •0•0•0•0•Updated Apr 13, 2017Apr 13, 2017

• bioconductor_v1

  Public archive
  Java

  •0•0•0•0•Updated Apr 12, 2017Apr 12, 2017

• nci-term-browser

  Public archive
  The NCI Term Browser is a web-based browser that allows users to search all terminologies, value sets and mappings on the LexEVS terminology server, to browse individual sources, and to easily follow the many links that connect them.

  Java

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  Other

  •6•3•0•0•Updated Apr 10, 2017Apr 10, 2017

• tcga-sandbox

  Public archive
  HTML

  •2•1•0•0•Updated Apr 6, 2017Apr 6, 2017