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myth edited this page Sep 10, 2019
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- Maybe this repository should be named genome_features_ploter, but I don't want to rename it yet, just because I firstly wrote it to plot gene clusters.
- Gene/ncRNA/other genome components or
read mapping or
GC conent or
read depth or
genome base or
genome synteny or
anything which has genome coordinate
maybe both can be called GenomeFeatures, although them may have different width/height or different position(in horizontal or vertical).
- So if I want to plot above all, I first wrote a tiny universal GenomeFeatures plot engine(input file of engine is GFF3 which is general format).
Once the tiny engine is ready, then I can define the above all features by setting different attributions:
feature_color
feature_shape
feature_order
feature_opacity
feature_label
feature_height_ratio
feature_shift_y
...
Let's start the journey from plot-gene-cluster