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many changes updating code and adding classes #16

many changes updating code and adding classes

many changes updating code and adding classes #16

Triggered via push March 10, 2024 19:38
Status Failure
Total duration 5m 30s
Artifacts 3

check-bioc.yml

on: push
Matrix: build-check
docker-build-and-push
0s
docker-build-and-push
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5 errors and 37 warnings
ubuntu-latest (4.3)
Process completed with exit code 1.
windows-latest (4.3)
R CMD check found WARNINGs
windows-latest (4.3)
Process completed with exit code 1.
macOS-latest (4.3)
R CMD check found WARNINGs
macOS-latest (4.3)
Process completed with exit code 1.
ubuntu-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
undefined slot classes in definition of "RexParams": summary(class "RexSummaries")
windows-latest (4.3)
Found the following significant warnings:
windows-latest (4.3)
'::' or ':::' imports not declared from:
windows-latest (4.3)
Undocumented code objects:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
undefined slot classes in definition of "RexParams": summary(class "RexSummaries")
macOS-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (4.3)
undefined slot classes in definition of "RexParams": summary(class "RexSummaries")
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
Found the following significant warnings:
macOS-latest (4.3)
'::' or ':::' imports not declared from:
macOS-latest (4.3)
Undocumented code objects:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3:
macOS-latest (4.3)
undefined slot classes in definition of "RexParams": summary(class "RexSummaries")

Artifacts

Produced during runtime
Name Size
Linux-biocversion-RELEASE_3_17-r-4.3-results Expired
1.5 MB
Windows-biocversion-RELEASE_3_17-r-4.3-results Expired
1.5 MB
macOS-biocversion-RELEASE_3_17-r-4.3-results Expired
1.49 MB