Remove all R scripts that require to disable the sandbox

ocaml · Aug 14, 2023 · 7f0e55a · 7f0e55a
1 parent edbb09f
commit 7f0e55a
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Showing 31 changed files with 12 additions and 156 deletions.
diff --git a/packages/odnnr/odnnr.2.0.0/files/install_keras.r b/packages/odnnr/odnnr.2.0.0/files/install_keras.r
diff --git a/packages/odnnr/odnnr.2.0.0/opam b/packages/odnnr/odnnr.2.0.0/opam
@@ -5,7 +5,6 @@ homepage: "https://github.com/UnixJunkie/odnnr"
 bug-reports: "https://github.com/UnixJunkie/odnnr/issues"
 dev-repo: "git+https://github.com/UnixJunkie/odnnr.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
-install: ["R" "CMD" "BATCH" "install_keras.r"]
 build: ["dune" "build" "-p" name "-j" jobs]
 depends: [
   "ocaml"
@@ -18,7 +17,6 @@ depends: [
   "cpm"
   "conf-gnuplot"
 ]
-x-ci-accept-failures: ["debian-unstable"]
 synopsis: "Regressor using a Deep Neural Network"
 description: """
 Some OCaml functions to drive the Deep Learning R 'keras' package;
@@ -36,10 +34,7 @@ Please interact with R to install required dependencies in user-space:
 R
 install.packages('keras', repos='http://cran.r-project.org')
 library(keras)
-install_keras(method = 'conda', tensorflow = 'cpu')""" {failure}
-extra-files: [
-  ["install_keras.r" "md5=b07326eec56b36df7a2aba08b29264e5"]
-]
+install_keras(method = 'conda', tensorflow = 'cpu')"""
 url {
   src: "https://github.com/UnixJunkie/odnnr/archive/v2.0.0.tar.gz"
   checksum: "md5=9fc50b3ca9df085018f041ec341879b9"

diff --git a/packages/oplsr/oplsr.8.0.1/files/install_pls.r b/packages/oplsr/oplsr.8.0.1/files/install_pls.r
diff --git a/packages/oplsr/oplsr.8.0.1/opam b/packages/oplsr/oplsr.8.0.1/opam
@@ -6,7 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/oplsr/issues"
 dev-repo: "git+https://github.com/UnixJunkie/oplsr.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: ["dune" "build" "-p" name "-j" jobs]
-install: ["R" "CMD" "BATCH" "install_pls.r"]
 depends: [
   "batteries"
   "conf-gnuplot"
@@ -33,8 +32,7 @@ https://www.jstatsoft.org/index.php/jss/article/view/v018i02/v18i02.pdf
 post-messages: """
 Please interact with R to install needed things in user-space:
 R
-install.packages('pls', repos='http://cran.r-project.org')""" {failure}
-extra-files: ["install_pls.r" "md5=2600c14c1b3f9e109ec651e8f763dd8e"]
+install.packages('pls', repos='http://cran.r-project.org')"""
 url {
   src: "https://github.com/UnixJunkie/oplsr/archive/v8.0.1.tar.gz"
   checksum: "md5=f87beecab830659b1329ce472559bbbd"

diff --git a/packages/orrandomForest/orrandomForest.1.0.0/files/install_matrix.r b/packages/orrandomForest/orrandomForest.1.0.0/files/install_matrix.r
diff --git a/packages/orrandomForest/orrandomForest.1.0.0/files/install_randomForest.r b/packages/orrandomForest/orrandomForest.1.0.0/files/install_randomForest.r
diff --git a/packages/orrandomForest/orrandomForest.1.0.0/opam b/packages/orrandomForest/orrandomForest.1.0.0/opam
@@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orrandomForest/issues"
 dev-repo: "git+https://github.com/UnixJunkie/orrandomForest.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
-  ["R" "CMD" "BATCH" "install_randomForest.r"]
-  ["R" "CMD" "BATCH" "install_matrix.r"]
   ["jbuilder" "build" "-p" name "-j" jobs]
 ]
 depends: [
@@ -17,12 +15,11 @@ depends: [
   "conf-r"
   "conf-gnuplot" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('Marix', repos='http://cran.r-project.org')
-install.packages('randomForest', repos='http://cran.r-project.org')" {failure}
+install.packages('randomForest', repos='http://cran.r-project.org')"
 ]
 synopsis: "Classification or regression using Random Forests"
 description: """
@@ -32,10 +29,6 @@ Data are exchanged via text files.
 For details, cf.
 Breiman, L., 2001. Random forests. Machine learning, 45(1), pp.5-32
 (DOI = 10.1023/A:1010933404324)."""
-extra-files: [
-  ["install_randomForest.r" "md5=c39ce051de6937deb5095a1906d86c0c"]
-  ["install_matrix.r" "md5=ab1c0ae726388159b1315bc9fe61a013"]
-]
 url {
   src: "https://github.com/UnixJunkie/orrandomForest/archive/v1.0.0.tar.gz"
   checksum: "md5=89e87dbe7d4f8a14d0610b12de5fa5f9"

diff --git a/packages/orrandomForest/orrandomForest.2.0.1/files/install_matrix.r b/packages/orrandomForest/orrandomForest.2.0.1/files/install_matrix.r
diff --git a/packages/orrandomForest/orrandomForest.2.0.1/files/install_randomForest.r b/packages/orrandomForest/orrandomForest.2.0.1/files/install_randomForest.r
diff --git a/packages/orrandomForest/orrandomForest.2.0.1/opam b/packages/orrandomForest/orrandomForest.2.0.1/opam
@@ -8,10 +8,6 @@ license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
   ["dune" "build" "-p" name "-j" jobs]
 ]
-install: [
-  ["R" "CMD" "BATCH" "install_randomForest.r"]
-  ["R" "CMD" "BATCH" "install_matrix.r"]
-]
 depends: [
   "ocaml"
   "dune"
@@ -20,12 +16,11 @@ depends: [
   "conf-gnuplot" {with-test}
   "cpm" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('Marix', repos='http://cran.r-project.org')
-install.packages('randomForest', repos='http://cran.r-project.org')" {failure}
+install.packages('randomForest', repos='http://cran.r-project.org')"
 ]
 synopsis: "Classification or regression using Random Forests"
 description: """
@@ -35,10 +30,6 @@ Data are exchanged via text files.
 For details, cf.
 Breiman, L., 2001. Random forests. Machine learning, 45(1), pp.5-32
 (DOI = 10.1023/A:1010933404324)."""
-extra-files: [
-  ["install_randomForest.r" "md5=c39ce051de6937deb5095a1906d86c0c"]
-  ["install_matrix.r" "md5=ab1c0ae726388159b1315bc9fe61a013"]
-]
 url {
   src: "https://github.com/UnixJunkie/orrandomForest/archive/v2.0.1.tar.gz"
   checksum: "md5=d2f65763cd449b3076d807db389c116f"

diff --git a/packages/orrandomForest/orrandomForest.3.0.0/files/install_matrix.r b/packages/orrandomForest/orrandomForest.3.0.0/files/install_matrix.r
diff --git a/packages/orrandomForest/orrandomForest.3.0.0/files/install_randomForest.r b/packages/orrandomForest/orrandomForest.3.0.0/files/install_randomForest.r
diff --git a/packages/orrandomForest/orrandomForest.3.0.0/opam b/packages/orrandomForest/orrandomForest.3.0.0/opam
@@ -8,10 +8,6 @@ license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
   ["dune" "build" "-p" name "-j" jobs]
 ]
-install: [
-  ["R" "CMD" "BATCH" "install_randomForest.r"]
-  ["R" "CMD" "BATCH" "install_matrix.r"]
-]
 depends: [
   "batteries"
   "conf-gnuplot" {with-test}
@@ -24,12 +20,11 @@ depends: [
   "ocaml"
   "parany"
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('Marix', repos='http://cran.r-project.org')
-install.packages('randomForest', repos='http://cran.r-project.org')" {failure}
+install.packages('randomForest', repos='http://cran.r-project.org')"
 ]
 synopsis: "Classification or regression using Random Forests"
 description: """
@@ -39,10 +34,6 @@ Data are exchanged via text files.
 For details, cf.
 Breiman, L., 2001. Random forests. Machine learning, 45(1), pp.5-32
 (DOI = 10.1023/A:1010933404324)."""
-extra-files: [
-  ["install_randomForest.r" "md5=c39ce051de6937deb5095a1906d86c0c"]
-  ["install_matrix.r" "md5=ab1c0ae726388159b1315bc9fe61a013"]
-]
 url {
   src: "https://github.com/UnixJunkie/orrandomForest/archive/v3.0.0.tar.gz"
   checksum: "md5=4595d09aeef0beae1575bf66d60ab24a"

diff --git a/packages/orsvm_e1071/orsvm_e1071.2.0.0/files/install_e1071.r b/packages/orsvm_e1071/orsvm_e1071.2.0.0/files/install_e1071.r
diff --git a/packages/orsvm_e1071/orsvm_e1071.2.0.0/files/install_svmpath.r b/packages/orsvm_e1071/orsvm_e1071.2.0.0/files/install_svmpath.r
diff --git a/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.2.0.0/opam
@@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orsvm-e1071/issues"
 dev-repo: "git+https://github.com/UnixJunkie/orsvm-e1071.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
-  ["R" "CMD" "BATCH" "install_e1071.r"]
-  ["R" "CMD" "BATCH" "install_svmpath.r"]
   ["jbuilder" "build" "-p" name "-j" jobs]
 ]
 depends: [
@@ -20,7 +18,6 @@ depends: [
   "minicli" {with-test}
   "parmap" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath."
 description: """
 Some OCaml functions to drive the RBF and linear SVMs of the R e1071 package
@@ -29,10 +26,6 @@ The svmpath package allows to efficiently compute the list of cost
 values (lambda = 1/C) that need to be tested in order to find the optimal
 lambda.
 This package really fires up and talks to an R interpreter."""
-extra-files: [
-  ["install_svmpath.r" "md5=5bcfd487963a2558353200750b4bb62f"]
-  ["install_e1071.r" "md5=e4ad6596051f390f3542d9058869c458"]
-]
 url {
   src: "https://github.com/UnixJunkie/orsvm-e1071/archive/v2.0.0.tar.gz"
   checksum: "md5=3ced2f5900780bc786e9da62fb399f90"

diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.0/files/install_e1071.r b/packages/orsvm_e1071/orsvm_e1071.3.0.0/files/install_e1071.r
diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.0/files/install_svmpath.r b/packages/orsvm_e1071/orsvm_e1071.3.0.0/files/install_svmpath.r
diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.0/opam
@@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orsvm-e1071/issues"
 dev-repo: "git+https://github.com/UnixJunkie/orsvm-e1071.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
-  ["R" "CMD" "BATCH" "install_e1071.r"]
-  ["R" "CMD" "BATCH" "install_svmpath.r"]
   ["jbuilder" "build" "-p" name "-j" jobs]
 ]
 depends: [
@@ -20,12 +18,11 @@ depends: [
   "minicli" {with-test}
   "parmap" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('e1071', repos='http://cran.r-project.org')
-install.packages('svmpath', repos='http://cran.r-project.org')" {failure}
+install.packages('svmpath', repos='http://cran.r-project.org')"
 ]
 synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath."
 description: """
@@ -37,10 +34,6 @@ lambda.
 This package really fires up and talks to an R interpreter.
 The Svm module can handle dense or sparse data matrices.
 The Svmpath module only handles dense matrices."""
-extra-files: [
-  ["install_svmpath.r" "md5=5bcfd487963a2558353200750b4bb62f"]
-  ["install_e1071.r" "md5=e4ad6596051f390f3542d9058869c458"]
-]
 url {
   src: "https://github.com/UnixJunkie/orsvm-e1071/archive/v3.0.0.tar.gz"
   checksum: "md5=0c02dc297f0d039b781a749bcc4ec022"

diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.1/opam
@@ -22,7 +22,7 @@ post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('e1071', repos='http://cran.r-project.org')
-install.packages('svmpath', repos='http://cran.r-project.org')" {success}
+install.packages('svmpath', repos='http://cran.r-project.org')"
 ]
 synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath"
 description: """

diff --git a/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam b/packages/orsvm_e1071/orsvm_e1071.3.0.2/opam
@@ -22,7 +22,7 @@ post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('e1071', repos='http://cran.r-project.org')
-install.packages('svmpath', repos='http://cran.r-project.org')" {success}
+install.packages('svmpath', repos='http://cran.r-project.org')"
 ]
 synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath"
 description: """

diff --git a/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam b/packages/orsvm_e1071/orsvm_e1071.4.0.0/opam
@@ -22,7 +22,7 @@ post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('e1071', repos='http://cran.r-project.org')
-install.packages('svmpath', repos='http://cran.r-project.org')" {success}
+install.packages('svmpath', repos='http://cran.r-project.org')"
 ]
 synopsis: "OCaml wrapper to SVM R packages e1071 and svmpath"
 description: """

diff --git a/packages/orxgboost/orxgboost.1.0.1/files/install_matrix.r b/packages/orxgboost/orxgboost.1.0.1/files/install_matrix.r
diff --git a/packages/orxgboost/orxgboost.1.0.1/files/install_xgboost.r b/packages/orxgboost/orxgboost.1.0.1/files/install_xgboost.r
diff --git a/packages/orxgboost/orxgboost.1.0.1/opam b/packages/orxgboost/orxgboost.1.0.1/opam
@@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orxgboost/issues"
 dev-repo: "git+https://github.com/UnixJunkie/orxgboost.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
-  ["R" "CMD" "BATCH" "install_matrix.r"]
-  ["R" "CMD" "BATCH" "install_xgboost.r"]
   ["jbuilder" "build" "-p" name "-j" jobs]
 ]
 depends: [
@@ -18,12 +16,11 @@ depends: [
   "batteries" {with-test}
   "cpm" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('Marix', repos='http://cran.r-project.org')
-install.packages('xgboost', repos='http://cran.r-project.org')" {failure}
+install.packages('xgboost', repos='http://cran.r-project.org')"
 ]
 synopsis: "Gradient boosting for OCaml using the R xgboost package"
 description: """
@@ -35,10 +32,6 @@ For details, cf. Chen, Tianqi, and Carlos Guestrin.
 Proceedings of KDD'16. ACM, 2016.
 DOI: 10.1145/2939672.2939785.
 https://xgboost.readthedocs.io/en/latest/"""
-extra-files: [
-  ["install_xgboost.r" "md5=0cc15f242946933f2d335a18b833fff1"]
-  ["install_matrix.r" "md5=ab1c0ae726388159b1315bc9fe61a013"]
-]
 url {
   src: "https://github.com/UnixJunkie/orxgboost/archive/v1.0.1.tar.gz"
   checksum: "md5=37389aa495cba09b8c4b79f30e6891f1"

diff --git a/packages/orxgboost/orxgboost.1.1.0/files/install_matrix.r b/packages/orxgboost/orxgboost.1.1.0/files/install_matrix.r
diff --git a/packages/orxgboost/orxgboost.1.1.0/files/install_xgboost.r b/packages/orxgboost/orxgboost.1.1.0/files/install_xgboost.r
diff --git a/packages/orxgboost/orxgboost.1.1.0/opam b/packages/orxgboost/orxgboost.1.1.0/opam
@@ -6,8 +6,6 @@ bug-reports: "https://github.com/UnixJunkie/orxgboost/issues"
 dev-repo: "git+https://github.com/UnixJunkie/orxgboost.git"
 license: "LGPL-2.1-only WITH OCaml-LGPL-linking-exception"
 build: [
-  ["R" "CMD" "BATCH" "install_matrix.r"]
-  ["R" "CMD" "BATCH" "install_xgboost.r"]
   ["dune" "build" "-p" name "-j" jobs]
 ]
 depends: [
@@ -18,12 +16,11 @@ depends: [
   "batteries" {with-test}
   "cpm" {with-test}
 ]
-x-ci-accept-failures: ["debian-unstable"]
 post-messages: [
 "Please interact with R to install needed things in user-space:
 R
 install.packages('Marix', repos='http://cran.r-project.org')
-install.packages('xgboost', repos='http://cran.r-project.org')" {failure}
+install.packages('xgboost', repos='http://cran.r-project.org')"
 ]
 synopsis: "Gradient boosting for OCaml using the R xgboost package"
 description: """
@@ -35,10 +32,6 @@ For details, cf. Chen, Tianqi, and Carlos Guestrin.
 Proceedings of KDD'16. ACM, 2016.
 DOI: 10.1145/2939672.2939785.
 https://xgboost.readthedocs.io/en/latest/"""
-extra-files: [
-  ["install_xgboost.r" "md5=0cc15f242946933f2d335a18b833fff1"]
-  ["install_matrix.r" "md5=ab1c0ae726388159b1315bc9fe61a013"]
-]
 url {
   src: "https://github.com/UnixJunkie/orxgboost/archive/v1.1.0.tar.gz"
   checksum: "md5=aa174395f3520015bb9fc8a7c1eb5ef8"

diff --git a/packages/orxgboost/orxgboost.1.2.0/files/install_matrix.r b/packages/orxgboost/orxgboost.1.2.0/files/install_matrix.r