TST Fix tests for bzip2 case

Split the testing of mocat directory parsing from the bzip2 issue. See discussion at #116
ngless-toolkit · Jul 31, 2019 · 7a8c0c8 · 7a8c0c8
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diff --git a/tests/mocat_sample_bz2/expected.fq b/tests/mocat_sample_bz2/expected.fq
diff --git a/tests/mocat_sample_bz2/expected.fq b/tests/mocat_sample_bz2/expected.fq
@@ -0,0 +1 @@
+../mocat_sample_bz2_paired/expected.singles.fq
diff --git a/tests/mocat_sample_bz2/sample/sample.fq.bz2 b/tests/mocat_sample_bz2/sample/sample.fq.bz2
diff --git a/tests/mocat_sample_bz2/sample/sample.fq.bz2 b/tests/mocat_sample_bz2/sample/sample.fq.bz2
diff --git a/tests/regression-bz2-chunk/README.md b/tests/regression-bz2-chunk/README.md
@@ -0,0 +1 @@
+See https://github.com/ngless-toolkit/ngless/issues/116
diff --git a/tests/regression-bz2-chunk/bz2.ngl b/tests/regression-bz2-chunk/bz2.ngl
@@ -0,0 +1,4 @@
+ngless "1.0"
+
+write(fastq('sample-multichunk-bzip2.fq.bz2'),
+        ofile='output.fq')
diff --git a/tests/regression-bz2-chunk/expected.fq b/tests/regression-bz2-chunk/expected.fq
diff --git a/tests/regression-bz2-chunk/sample-multichunk-bzip2.fq.bz2 b/tests/regression-bz2-chunk/sample-multichunk-bzip2.fq.bz2
@@ -0,0 +1 @@
+../../test_samples/sample-multichunk-bzip2.fq.bz2