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Workflow file for this run

name: nf-core AWS full size tests
# This workflow is triggered on published releases.
# It can be additionally triggered manually with GitHub actions workflow dispatch button.
# It runs the -profile 'test_full' on AWS batch
on:
release:
types: [published]
workflow_dispatch:
jobs:
run-tower:
name: Run AWS full tests
if: github.repository == 'nf-core/scrnaseq'
runs-on: ubuntu-latest
strategy:
matrix:
aligner: ["alevin", "kallisto", "star", "cellranger", "universc"]
steps:
- name: Launch workflow via tower
uses: seqeralabs/action-tower-launch@v2
with:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/scrnaseq/work-${{ github.sha }}
parameters: |
{
"hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/scrnaseq/results-${{ github.sha }}"
}
profiles: test_full
- uses: actions/upload-artifact@v4
with:
name: Tower debug log file
path: |
tower_action_*.log
tower_action_*.json