Update modules #3
Workflow file for this run
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| name: nf-core AWS test | ||
| # This workflow can be triggered manually with the GitHub actions workflow dispatch button. | ||
| # It runs the -profile 'test' on AWS batch | ||
| on: | ||
| workflow_dispatch: | ||
| jobs: | ||
| run-tower: | ||
| name: Run AWS tests | ||
| if: github.repository == 'nf-core/scrnaseq' | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| aligner: ["alevin", "kallisto", "star", "cellranger", "universc"] | ||
| steps: | ||
| # Launch workflow using Tower CLI tool action | ||
| - name: Launch workflow via tower | ||
| uses: seqeralabs/action-tower-launch@v2 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | ||
| revision: ${{ github.sha }} | ||
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/scrnaseq/work-${{ github.sha }} | ||
| parameters: | | ||
| { | ||
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/scrnaseq/results-test-${{ github.sha }}/aligner_${{ matrix.aligner }}", | ||
| "aligner": "${{ matrix.aligner }}" | ||
| } | ||
| profiles: test | ||
| <<<<<<< HEAD | ||
| - uses: actions/upload-artifact@v4 | ||
| ======= | ||
| - uses: actions/upload-artifact@v3 | ||
| >>>>>>> dev | ||
| with: | ||
| name: Tower debug log file | ||
| path: | | ||
| tower_action_*.log | ||
| tower_action_*.json | ||
