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fix registry entries
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subwaystation committed Jun 21, 2023
1 parent e6ca838 commit f9840cf
Showing 1 changed file with 7 additions and 2 deletions.
9 changes: 7 additions & 2 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,6 @@ profiles {
}
docker {
docker.enabled = true
docker.registry = 'quay.io'
docker.userEmulation = true
conda.enabled = false
singularity.enabled = false
Expand All @@ -172,7 +171,6 @@ profiles {
}
podman {
podman.enabled = true
podman.registry = 'quay.io'
conda.enabled = false
docker.enabled = false
singularity.enabled = false
Expand Down Expand Up @@ -231,6 +229,13 @@ env {
// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']

// Set default registry for Docker, Singularity and Podman independent of -profile
// Will not be used unless Docker, Singularity and Podman are enabled
// Set to your registry if you have a mirror of containers
docker.registry = 'quay.io'
podman.registry = 'quay.io'
singularity.registry = 'quay.io'

def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
timeline {
enabled = true
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