fix module paths

nf-core · Jun 21, 2023 · ee6d12e · ee6d12e
1 parent 73ffc0c
commit ee6d12e
Show file tree

Hide file tree

Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/modules/local/extract_communities/main.nf b/modules/local/extract_communities/main.nf
@@ -5,7 +5,7 @@ process EXTRACT_COMMUNITIES {
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
-        'biocontainers/samtools:1.17--h00cdaf9_0' }"
+        'quay.io/biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(fasta), path(community)

diff --git a/modules/local/multiqc_community/main.nf b/modules/local/multiqc_community/main.nf
@@ -5,7 +5,7 @@ process MULTIQC_COMMUNITY {
     conda "bioconda::multiqc=1.14"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/multiqc:1.14--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.14--pyhdfd78af_0' }"
+        'quay.io/biocontainers/multiqc:1.14--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(multiqc_files, stageAs: "?/*")

diff --git a/modules/local/net2communities/main.nf b/modules/local/net2communities/main.nf
@@ -5,7 +5,7 @@ process NET2COMMUNITIES {
     conda "bioconda::pggb=0.5.3"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pggb:0.5.3--hdfd78af_2':
-        'biocontainers/pggb:0.5.3--hdfd78af_2' }"
+        'quay.io/biocontainers/pggb:0.5.3--hdfd78af_2' }"
 
     input:
     tuple val(meta), path(txts)

diff --git a/modules/local/split_approx_mappings_in_chunks/main.nf b/modules/local/split_approx_mappings_in_chunks/main.nf
@@ -5,7 +5,7 @@ process SPLIT_APPROX_MAPPINGS_IN_CHUNKS {
     conda "bioconda::pggb=0.5.3"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pggb:0.5.3--hdfd78af_2':
-        'biocontainers/pggb:0.5.3--hdfd78af_2' }"
+        'quay.io/biocontainers/pggb:0.5.3--hdfd78af_2' }"
 
     input:
     tuple val(meta), path(paf)