Use explicit -o option in MQC command #76
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| name: rnaseq-nf | |
| # This workflow is triggered on pushes to the repository. | |
| on: [push] | |
| jobs: | |
| build: | |
| name: rnseq-nf ci | |
| # This job runs on Linux | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java_version: ['11.0.4'] | |
| steps: | |
| - name: Environment | |
| run: env | sort | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: ${{ matrix.java_version }} | |
| architecture: x64 | |
| - name: Tests | |
| run: | | |
| curl -fsSL get.nextflow.io | bash | |
| ./nextflow run . -profile docker | |
| env: | |
| NXF_ANSI_LOG: false |