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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 96 8

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 14 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 22 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 54 repositories
  • software-skills Public

    Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

    neuroinformatics-unit/software-skills’s past year of commit activity
    7 CC-BY-4.0 0 0 3 Updated Sep 20, 2024
  • course-software-good-practice Public

    Slides for NIU collaborative coding and software development good practices

    neuroinformatics-unit/course-software-good-practice’s past year of commit activity
    SCSS 6 BSD-3-Clause 0 4 1 Updated Sep 20, 2024
  • slides-SWC-PhD-intro Public Forked from neuroinformatics-unit/slides-neuroinformatics-unit-OCNS-INCF

    Slides introducing the software skills courses on the SWC/GCNU PhD course

    neuroinformatics-unit/slides-SWC-PhD-intro’s past year of commit activity
    SCSS 0 BSD-3-Clause 2 1 0 Updated Sep 19, 2024
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 11 4 Updated Sep 19, 2024
  • course-behaviour-hpc Public
    neuroinformatics-unit/course-behaviour-hpc’s past year of commit activity
    Python 5 BSD-3-Clause 0 1 0 Updated Sep 19, 2024
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 96 BSD-3-Clause 8 73 14 Updated Sep 17, 2024
  • dashboard Public Forked from github-community-projects/org-metrics-dashboard

    Overview of all Neuroinformatics Unit repos

    neuroinformatics-unit/dashboard’s past year of commit activity
    TypeScript 0 MIT 17 3 1 Updated Sep 17, 2024
  • 2024-course Public

    Optional course for 2024 PhD students on RSE best practices

    neuroinformatics-unit/2024-course’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Sep 17, 2024
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    9 CC-BY-4.0 1 12 1 Updated Sep 16, 2024
  • NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    neuroinformatics-unit/NeuroBlueprint’s past year of commit activity
    17 CC-BY-4.0 1 9 1 Updated Sep 16, 2024
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