Merge pull request #8 from mfschroeder/master

Testing for core module elmer.py

.github/workflows/python-package-conda.yml

@@ -0,0 +1,39 @@
+name: Python Package using Conda
+
+on: [push, pull_request]
+
+jobs:
+  build-linux:
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 5
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.8
+    - name: Add conda to system path
+      run: |
+        # $CONDA is an environment variable pointing to the root of the miniconda directory
+        echo $CONDA/bin >> $GITHUB_PATH
+    - name: Install dependencies
+      run: |
+        conda env update --file environment.yml --name base
+    - name: Lint with flake8
+      run: |
+        conda install flake8
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        conda install pytest
+        pytest
+    - name: Code coverage with pytest
+      run: |
+        conda install pytest
+        conda install pytest-cov
+        pytest --cov=pyelmer/test

.gitignore

@@ -13,3 +13,4 @@ examples/3D_Electrostatic_Capacitance/LaTeX_Source/main.run.xml
 examples/3D_Electrostatic_Capacitance/LaTeX_Source/main.synctex.gz
 *.toc
 *.bbl
+.coverage

environment.yml

@@ -0,0 +1,9 @@
+name: test
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - pyyaml
+  - python-gmsh
+  - matplotlib
+  - numpy

pyelmer/post.py

@@ -98,6 +98,8 @@ def plot_residuals(sim_dir, solvers, save=False):
 
     residuals = {}
     linres_str = {}  # string to detect linear solver residuals
+    lin_res_idx = []
+    lin_res_relc = []
     for solver in solvers:
         residuals.update({solver: SolverResiduals([SteadyStateIteration([])])})
         if solver == "heat equation":

pyelmer/test/test_data/body_forces.yml

@@ -0,0 +1,2 @@
+test_body_force:
+  Test Parameter: "1.0"

pyelmer/test/test_data/boundaries.yml

@@ -0,0 +1,3 @@
+test_boundary:
+  test_parameter: "1.0"
+

pyelmer/test/test_data/initial_conditions.yml

@@ -0,0 +1,2 @@
+test_initial_condition:
+  test_parameter: "1.0"

pyelmer/test/test_data/materials.yml

@@ -0,0 +1,2 @@
+test_material:
+  test_parameter: "1.0" 

pyelmer/test/test_data/simulations.yml

@@ -0,0 +1,2 @@
+test_simulation:
+  Test Parameter: "1.0"

pyelmer/test/test_data/solvers.yml

@@ -0,0 +1,5 @@
+test_solver:
+  test_parameter: "1.0"
+
+test_post_solver:
+  test_post_parameter: "1.0"