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Joss edits #212

Merged
merged 142 commits into from
Jun 14, 2024
Merged

Joss edits #212

merged 142 commits into from
Jun 14, 2024

Commits on Jun 14, 2024

  1. chore: increase timeout for test shen moho

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  2. build: explicitly specify tqdm as dependency

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  3. docs: update contributing guide

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  4. chore: cleanup Make commands

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  5. docs: simplify binder env

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  6. refactor: update np random number generator

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  7. chore: update ruff version in pre-commit

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  8. style: reformat with new ruff version

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  9. docs: remove python version and nodefaults from binder env

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  10. docs: fix issues with subplot_layout example

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  11. docs: try nbgitpull link for launch binder buttons

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  12. docs: switch binder env to separate repo, remove launch buttons

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  13. docs: conform fetch walkthrough to standard figure creation style

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  14. chore: add tests for regions

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  15. style: fix regions test styling

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  16. style: add typing to function

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  17. docs: add available dataset gallery

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  18. docs: update dataset gallery template

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  19. docs: update bedmap2 dataset notebook

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  20. docs: add bedmachine dataset notebook

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  21. fix: remove faulty layer name from fetch bedmachine

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  22. docs: mention dataset gallery in fetch walkthrough

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  23. docs: update references

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  24. docs: add more dataset notebooks

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  25. docs: reorganize available dataset gallery

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  26. chore: don't run tests on docs or style commits

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  27. feat: add Arctic/Greenland to utils/maps

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  28. feat: add some Greenland regions

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  29. feat: add fetch MODIS Greenland

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  30. feat: add pen kwarg to show_region

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  31. fix: load deepbedmap instead of returning string

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  32. docs: edit some docstrings

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  33. docs: add more dataset notebooks

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  34. fix: change greenland region slightly

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  35. feat: add BAS greenland groundingline

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  36. feat: add subset grid function

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  37. chore: change default profile map cmap

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  38. feat: add hemisphere arg to most plotting functions 

    BREAKING CHANGE: this alters a vast majority of the code!
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  39. chore: change arg image to modis

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  40. chore: add greenland coast version to plotting functions

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  41. fix: correctly center interactive map

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  42. feat: add inset map option for greenland

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  43. chore: misc fixes

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  44. feat: allow passing .cpt file to colorbar histogram

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  45. fix: improve creation of colormap

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  46. feat: add function for combined min max of several grids

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  47. docs: rerun all docs

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  48. docs: add modis mog to index

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  49. chore: fix test

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  50. refactor: change default point color in plot_profile

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  51. fix: warning about histogram if grid is constant value

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  52. feat: enable passing single grid to plot_3d

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  53. fix: update figure shifting of plot_3d

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  54. fix: update warning about grid region extract in plot_3d

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  55. feat: add cbar_perspective arg to plot_3d

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  56. refactor: remove default vlims for plot_3d

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  57. feat: add cbar_labels kwarg to plot_3d

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  58. refactor: changed default shading to false in plot_3d

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  59. refactor: set cbar position in plot_3d

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  60. refactor: use new set_cmap function in plot_3d

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  61. docs: rerun notebook

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  62. docs: add GHF to dataset gallery

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  63. docs: use full citations in dataset gallery

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  64. docs: add GIA to dataset gallery

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  65. docs: add gravity to dataset gallery

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  66. docs: add ice velocity to dataset gallery

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  67. docs: add magnetics to dataset gallery

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  68. docs: add mass change to dataset gallery

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  69. docs: add groundline to dataset gallery

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  70. docs: add geomap geology to dataset gallery

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  71. style: auto style fixes

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  72. docs: add basal melt rate to dataset gallery

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  73. docs: add measures ice boundaries to dataset gallery

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  74. style: auto style fix

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  75. style: fixes for pylint

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  76. docs: add rosetta grav/mag to gallery datasets

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  77. chore: pre-commit autoupdate to monthly

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  78. docs: clarify project scope and goals

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  79. docs: clarify all mentions of format of region tuples

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  80. fix: remove support for fetch ROSETTA grav and mag to align with goal… 

    … of only providing common and widespread datasets
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  81. fix: remove fetch basement due to limited spatial extent of data

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  82. refactor: rename fetch measures_boundaries to antarctic_boundaries 

    BREAKING CHANGE: make sure to update your code with the new function name!
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  83. feat: add bedmachine data from Greenland

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  84. feat: add geoid for Greenland and change geoid region for Antarctica

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  85. fix: for bedmachine grids, restore correct registration type and only… 

    … resample after geoid added to grids
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  86. chore: update tests for bedmachine with reference change

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  87. feat: add function to extract default hemisphere

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  88. refactor: if available, use environmental variables for setting hemis… 

    …phere throughout code

To utilize this feature, either set a system environment variable POLARTOOLKIT_HEMISPHERE equal to either south or north, or in your python file/notebook use os.environ to set this value for the current session.
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  89. refactor: use environment variable for setting hemisphere in profile

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  90. refactor: log info instead of error in mask_from_shp

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  91. docs: rerun notebooks

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  92. feat: enable greenland support for profiles

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  93. style: auto fixes

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  94. chore: update use of pylint

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  95. build: set min pylint version

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  96. refactor: remove unnecessary verbose and kwargs for some fetches

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  97. style: ignore pylint warnings

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  98. style: fix cmap issues in plot_profile

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  99. refactor: add hemisphere and remove kwargs from call to geoid

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  100. fix: specify hemisphere in bedmap2 reference test

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  101. chore: exclude some md files from pre-commit

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  102. build: include environment.yml file as backup for issues with installing

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  103. docs: consolidate and update install instructions

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  104. docs: add release instructions to contributing guide

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  105. docs: add instructions for EarthData login

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  106. docs: add missing links

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  107. feat: add mass change for Greenland

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  108. chore: update fetch mass change test

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  109. feat: add etopo data for the arctic/greenland

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  110. feat: add ice velocity for Greenland

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  111. refactor: combine fetch modis_moa and modis_mog to modis 

    BREAKING CHANGE: make sure to update your code to use the new function `fetch.modis()` and specify MoG vs MoA with parameter hemisphere = "south" or "north"
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  112. build: add deprecation package to dev deps

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  113. chore: add deprecations to old fetch modis functions

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  114. chore: add deprecation to old fetch measures boundaries function

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  115. style: style fixes

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  116. build: move deprecation from dev to normal dependencies

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  117. docs: merge arctic and greenland dataset gallery

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  118. refactor: move alter_region from utils to regions

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  119. feat: add region_ll_to_xy function

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  120. fix: properly set default region in basemap

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  121. feat: add points option to basemap

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  122. fix: remove alter region from get_regions

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  123. docs: major overhaul of docs structure to follow the Divio system

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  124. style: auto style fixes

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  125. fix: fix tests for deprecations

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  126. fix: remove hash from mass_change

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  127. fix: fix fetch ice vel issue

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  128. refactor: update deprecated pandas delim_whitespace

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  129. fix: fix deprecated test alter region

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  130. fix: fix deprecated test measures boundaries

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  131. docs: rerun all dataset gallery notebooks

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  132. chore: add codecov token

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  133. chore: mark some tests as earthdata

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  134. docs: add logo to README

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  135. chore: add fetch mark to some tests

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  136. chore: don't run fetch calls during test 

    This should drastically speed up testing, not overload GHA with downloading datasets, but means testing of fetch calls will need to be performed manual by deleting the local pooch cache and rerun all fetch calls / tests.
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  137. docs: spelling mistake

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  138. chore: remove pip local install in testing CI

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  139. chore: switch CI from mini-conda to micromamba

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  140. chore: enable caching of test CI environment

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  141. refactor: change module name from profile to profiles to match pl… 

    …ural style of other modules.

BREAKING CHANGE: please update all import statements to use `profiles` instead of `profile`!
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  142. docs: typo and readme update

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