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Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.

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Installation

Install Julia

To install the latest version of Julia, follow the juliaup installation guide here: https://github.com/JuliaLang/juliaup/blob/61c09c460ca3a150e542522be8b8b8a5041e718a/README.md

Clone this repository

git clone [email protected]:jonathanfischer97/InteractiveOscillator.git

Instantiate Julia environment

In order to reproduce the necessary package environment, first:

  1. cd into the cloned repository.
  2. Run julia --project -e 'using Pkg; Pkg.instantiate()'

Running interactive visualization

To open the interactive visualization window, run the main script with julia --project visualizer.jl. This will open up a separate window that looks like this:image

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Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.

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