Merge branch 'main' of https://github.com/jhuapl-bio/datasets

jhuapl-bio · Sep 15, 2023 · 607b61a · 607b61a
2 parents 041d6ee + eeda346
commit 607b61a
Showing 1 changed file with 14 additions and 2 deletions.
diff --git a/index.html b/index.html
@@ -7,17 +7,29 @@
     <title>GitHub Pages Index</title>
 </head>
 <body>
-    <h1>Welcome to My GitHub Pages</h1>
+    <h1>Welcome the JHU/APL Biological Sciences Datasets Directory</h1>
 
     <h2>Download all data here</h2>
     <ul>
         <li><a href="https://github.com/jhuapl-bio/datasets/archive/refs/heads/main.zip">Download</a></li>
     </ul>
     <h2>Download kraken2 databases</h2>
     <ul>
-        <li><a href="https://github.com/jhuapl-bio/datasets/raw/main/databases/kraken2/test_metagenome.tar.gz">Download</a></li>
+        <li><a href="https://github.com/jhuapl-bio/datasets/raw/main/databases/kraken2/test_metagenome.tar.gz">Test</a></li>
+        <li><a href="https://genome-idx.s3.amazonaws.com/kraken/k2_standard_08gb_20230605.tar.gz">Standard Refseq 8 GB</a></li>
+        <li><a href="https://genome-idx.s3.amazonaws.com/kraken/k2_viral_20230605.tar.gz">Viral (Refseq)</a></li>
+        <li><a href="https://media.githubusercontent.com/media/jhuapl-bio/mytax/master/databases/flukraken2.tar.gz">Flukraken2</a></li>
+        <li><a href="https://benlangmead.github.io/aws-indexes/k2">All Others</a></li>
     </ul>
 
+    <h2>Download Kraken2 Report File</h2>
+    <ul>
+        <li><a href="outputs/kraken2/nanosim_metagenome.fastq.report">Long Reads</a></li>
+        <li><a href="outputs/kraken2/iss_reads.report">Short Reads</a></li>
+    </ul>
+
+
+
     <h2>Krona Outputs</h2>
     <ul>
         <li><a href="outputs/krona/nanosim_metagenome.fastq.html">Long Reads Krona Output</a></li>