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build(deps): bump org.apache.commons:commons-configuration2 from 2.9.0 to 2.10.1 #518
base: 7_x-prod
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build(deps): bump org.apache.commons:commons-configuration2 from 2.9.0 to 2.10.1 #518
Commits on Mar 7, 2024
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dspace/config: enable localhost:4000 for REST API
rest.cors.allowed-origins allows us to develop on Angular locally while using a remote DSpace API. We will perhaps disable this in the long run after we deploy DSpace 7.
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dspace.cfg: disable extra "browse by"
I ported these from DSpace 6 but they are aesthetically annoying in DSpace 7 when you have more than ~4.
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dspace: add controlled vocabularies
These were copied directly from our DSpace 6 branch.
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dspace/config: import latest spider lists
These are the latest spider agent lists from our DSpace 6.x branch.
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dspace/config: adjust usage statistics
Sync settings with DSpace 6. We do not want to log bot requests, and we want to match user agents case insensitively.
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dspace.cfg: override ImageMagick density
Use a "2x" supersample by overriding the ImageMagick density from 72 to 144. This creates higher-quality PDF thumbnails.
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dspace.cfg: enable eperson.subscription.onlynew
We only want to send subscription mails for new items, not modified ones.
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Add IDs to controlled vocabularies
These behave differently in DSpace 7 than in DSpace 6 when the IDs are missing (you get infinitely repeating values in the submission form dropdown).
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discovery.xml: update default filters
Our subjects are in dcterms.subject and we don't use hierarchical subjects. Also, change the date issued field.
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discovery.xml: more filter adjustments
Use dcterms.type for Type and add a few more filters from CGSpace.
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dspace/config/spiders: update agents
Update from latest COUNTER-Robots list, removing from the local ILRI overrides where needed.
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dspace.cfg: increase thumbnail size to 500px
It has been ten years since we last increased the thumbnail size on CGSpace. 300px has served us well, but higher-density displays and new uses for thumbnails call for larger sizes. For reference, I checked 300 - 600px to see the implications on file size for one portrait layout PDF: - 212x300px: 31 kilobytes <--- current - 283x400px: 52 kilobytes - 354x500px: 76 kilobytes - 424x600px: 106 kilobytes I think 500px is a good compromise.
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dspace: use cg.identifier.doi for Datacite import
We don't use Datacite yet, but this is easy to change now so it can possibly work in the future.
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dspace: use CG Core fields for PubMed import
We are not using this yet, but it will surely come in handy.
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Add dspace/config/default.license
Copied directly from CGSpace's DSpace 6 repository.
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dspace/config: import submission forms again
Hopefully easier to maintain during future rebases now.
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dspace/config: enable Sherpa Romeo summary for ISSNs
Just to show that it's possible and get feedback from our submitters.
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dspace/config: dc.date.issued → dcterms.issued
Update a few Discovery configs to use dcterms.issued instead of dc.date.issued.
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dspace/config: enable LDAP authentication
I was surprised to see this was disabled, as I already tested it a few months ago.
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dspace/config: use OU=ILRIHUB in ldap group map
The DC=ILRI no longer exists in Active Directory as far as I can see from checking a few users.
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dspace/config: disable ldap groupmap
There seems to be a bug in DSpace 7.6-SNAPSHOT that causes LDAP lo- gins to fail when the groupmap is enabled.
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dspace/config: remove subregion value pairs from submission form
We are using an external controlled vocabulary instead. This hasn't been needed since we got rid of Atmire's Listings and Reports module in DSpace 6.
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dspace/config: update discovery.xml
Change a few more references from dc.subject to dcterms.subject.
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dspace/config: update discovery.xml
Replace a few more references to dc.description.abstract, since we are using dcterms.abstract.
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dspace/config: remove srsc from submission-forms.xml
Remove this so that DSpace doesn't automatically try to create a browse option for it. This is a side effect of a new browse feature in DSpace 7.6, where vocabularies in the submission form are auto- matically configured as browses.
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dspace.cfg: enable linked browse for some fields
The implementation is awkward, but seems to work if we list all our fields one by one. See: https://wiki.lyrasis.org/display/DSDOC7x/Configuration+Reference
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dspace-rest: allow bundleName parameter in bitstream endpoint
Port of DSpace 6.x patch to legacy REST API in DSpace 7. See: DSpace#8343
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We should use the same capitalization that we use elsewhere so it is more predictable and consistent.
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submission-forms.xml: use input type tag for more fields
For any fields that have more than a dozen or so values and don't need free text, we can use the tag input type.
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submission-forms.xml: revert some changes to tags
The tag input type is currently buggy, and in any case we should only be using it for lists that have tens or more values.
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submission-forms.xml: fix AGROVOC field
Fields using external vocabularies must be onebox.
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Re-order and add CGIAR Impact Platform.
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dspace/config: remove browse links
I'm not using these anymore, as I've worked around them by creating a custom component in Angular that links to the Discovery search.
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dspace/config/modules: disable automatic Discovery reindexing
I always run this manually after doing migrations.
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We were not using this in DSpace previously, and DSpace 7 has now changed the default to enabled.
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dspace/config/dspace.cfg: enable assumelogin
Allow super administrators to impersonate other users.
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dspace/config/crosswalks: update OAI mods crosswalk
Port the MODS 3.7 crosswalk from our DSpace 6 implementation.
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dspace/config/crosswalks: update other crosswalks
These crosswalks are used to insert metadata into item pages for search bots like Google to consume. I am not sure whether the XHTML crosswalk is actually being used anymore...
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Revert "dspace/config: disable ldap groupmap"
This reverts commit 8ed657958dbab884daea84d537553ad17ef5e620. The bug was fixed. See: DSpace#9152
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dspace/config/log4j2.xml: reduce noisy logs
mwood on Slack suggested this for reducing the unhelpful and noisy logs like: 2023-11-01 00:00:07,581 INFO a2151e44-c888-4fbc-a54e-b71edeb5cc45 1b74f2ee-d4cc-473b-962c-65e6f43c9544 org.dspace.app.rest.utils.DSpaceAPIRequestLoggingFilter @ Before request [GET /server/api/core/items/f5e081f4-1c45-4dbf-8cac-2126119f87e5] originated from /
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discovery.xml: minor adjustment to date sorting
Make sure that we have both ascending and descending whenever there is a date available for sorting. Also, change the default sort order for sortDateIssued to asc as there is already sortDateIssuedDesc. See: DSpace#9104
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dspace/config: update OAI mods crosswalk
FAO highlighted that the markup for alternative titles is slightly different. See: https://www.loc.gov/standards/mods/userguide/titleinfo.html
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dspace/config: update ORCID in submission form
Clarify that these are not just for CGIAR authors, but recommended.
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dspace/config: make DOI non-repeatable in submission form
It is not repeatable in our current production DSpace 6 instance so I don't know why it is repeatable here.
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dspace/config: make series name/number not repeatable
This does not need to be repeatable, and indeed is not in our prod- uction DSpace 6 instance.
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dspace/config/spiders: remove ^mozilla from spiders
Because DSpace applies these case-insensitively, this means that we excluded real hits from Mozilla user agents for the past two weeks.
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dspace/config: remove subregion browse
It is not helpful at all because the values are uncontrolled.
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dspace/config: update ORCID identifiers
Sorted in vim with `sort i` and formatted with tidy: $ tidy -xml -utf8 -m -iq -w 0 dspace/config/controlled-vocabularies/cg-creator-identifier.xml
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dspace/solr: Increase maxBooleanClauses for all cores
This solves an issue when a user belongs to too many groups, which causes the Solr query to have too many "OR" clauses when searching for communities and collections they have access to. We only need the increased value in the search core, but one comment notes that this setting modifies an internal Lucene variable globally, so it can get reset depending on the order cores are loaded in. The error in the DSpace log is: too many boolean clauses.
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dspace/config: add controlled vocabulary for publishers
This is based on the current top ~100 publishers in CGSpace in addition to all CGIAR centers, Initiatives, and Impact platforms.
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dspace/config: update affiliations
Top 1,000 or so existing affiliations on CGSpace, plus all current Initiatives and Impact Platforms.
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dspace/config: update Initiative name
The Fruit and Vegetables Initiative started using their long name on 2023-08. I updated it everywhere but here!
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Author requested we update his name format on CGSpace.
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ilri: set connection read_only for dry run
Python script interacting with the database can be read only when they are running in dry run mode.
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dspace/config: update ORCID identifiers
Sorted in vim with `sort i` and formatted with tidy: $ tidy -xml -utf8 -m -iq -w 0 dspace/config/controlled-vocabularies/cg-creator-identifier.xml
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dspace/config: add cg.place to submission-forms.xml
This got lost in the transition to DSpace 7.
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dspace/config: adjust submission form
Put Initiatives and Impact Areas on the same line.
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dspace/config: move common languages in submission form
Move English, French, and Spanish to the top of the controlled list in the submission form.
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dspace/config: update controlled vocabulary for ORCID identifiers
Remove some incorrect ones based on clustering in OpenRefine and checking their profiles on orcid.org.
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dspace/config: add controlled vocabulary for project identifier
For now only IFPRI is using these.
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dspace/config: only show ISSN for journal articles
Use type-bind to only show ISSN for journal articles and data papers.
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dspace/config: minor tweak to related reference
Minor tweak to language.
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submission-forms.xml: re-work some URL fields
We decided to re-work the way we tag datasets: - If a dataset has a DOI, it should be entered in the DOI field - Otherwise, it should be entered in the normal URL field - The "cg.identifier.dataurl" field will be for "related" datasets
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dspace/config: update author controlled vocabulary
IFPRI sent me a list of their authors so I combined it with ours.
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dspace: disable controlled vocabulary for journal
There is a bug with onebox fields that use controlled vocabularies and are not repeatable.
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dspace: update controlled vocabulary for affiliation
Remove a few incorrect and duplicate affiliations.
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dspace: remove duplicate authors
I don't know why these are here, I fixed them twice already grrr.
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Commits on Mar 8, 2024
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dspace/config: update UNICEF in controlled vocabularies
The name has been United Nations Children's Fund since 1953. :) See: https://www.unicef.org/about-unicef/frequently-asked-questions#3
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ilri/generate_thumbnails.py: minor optimization
Use a list comprehension to filter out rows that are missing a url or filename.
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Commits on Mar 20, 2024
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dspace/config: update ORCID identifiers
IWMI sent me some new ones so I updated our list. This time I used GNU `sort` instead of `sort i` in vim because GNU sort handles ac- cents better. Formatted with tidy: $ tidy -xml -utf8 -m -iq -w 0 dspace/config/controlled-vocabularies/cg-creator-identifier.xml
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Commits on Mar 21, 2024
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build(deps): bump org.apache.commons:commons-configuration2
Bumps org.apache.commons:commons-configuration2 from 2.9.0 to 2.10.1. --- updated-dependencies: - dependency-name: org.apache.commons:commons-configuration2 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]>
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