General: Include all additional categories

hubmapconsortium · Aug 2, 2023 · fe3fdef · fe3fdef
1 parent 7cf3010
commit fe3fdef
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Showing 2 changed files with 13 additions and 7 deletions.
diff --git a/src/ingest_validation_tools/docs_utils.py b/src/ingest_validation_tools/docs_utils.py
@@ -187,12 +187,15 @@ def generate_readme_md(
         'title': title,
         'schema_name': schema_name,
         'category': {
-            'imaging': 'Imaging assays',
-            'clinical_imaging': 'Clinical imaging modalities',
-            'mass_spectrometry': 'Mass spectrometry',
-            'mass_spectrometry_imaging': 'Imaging mass spectrometry',
-            'sequence': 'Sequence assays',
-            'single_cycle_fluorescence_microscopy': 'Single-cycle Fluorescence Microscopy',
+            'imaging': 'Imaging',
+            'clinical_imaging': 'Clinical Imaging Modalities',
+            'histology': 'Histology',
+            'mass_spectrometry': 'Mass Spectrometry',
+            'mass_spectrometry_imaging': 'Imaging Mass Spectrometry (IMS)',
+            'mxfbe': 'MxFBE',
+            'sequence': 'Sequence Assays',
+            'single_cycle_fluorescence_microscopy': 'Single-cycle Fluorescence Microscopy (SFM)',
+            'spatial_transcriptomics': 'Spatial Transcriptomics',
             'other': 'Other TSVs'
         }[category],
         'max_version': max_version,

diff --git a/src/ingest_validation_tools/enums.py b/src/ingest_validation_tools/enums.py
@@ -95,9 +95,12 @@
     'assay_category': [
         'clinical_imaging',
         'imaging',
+        'histology',
         'mass_spectrometry',
         'mass_spectrometry_imaging',
+        'mxfbe',
         'sequence',
-        'single_cycle_fluorescence_microscopy'
+        'single_cycle_fluorescence_microscopy',
+        'spatial_transcriptomics'
     ],
 }