Production deploy -- d15561b

hubmapconsortium · Jun 15, 2023 · a31a603 · a31a603
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diff --git a/assets/ccf.owl.n3store.json b/assets/ccf.owl.n3store.json
diff --git a/assets/icons/organs/ico-organs-extrapulmonary bronchus.svg b/assets/icons/organs/ico-organs-extrapulmonary bronchus.svg
diff --git a/assets/icons/organs/ico-organs-larynx.svg b/assets/icons/organs/ico-organs-larynx.svg
diff --git a/assets/icons/organs/ico-organs-palatine tonsil.svg b/assets/icons/organs/ico-organs-palatine tonsil.svg
diff --git a/assets/icons/organs/ico-organs-trachea.svg b/assets/icons/organs/ico-organs-trachea.svg
diff --git a/body-ui/main.js b/body-ui/main.js
diff --git a/body-ui/wc.js b/body-ui/wc.js
diff --git a/docs/ccf-api/changelog.html b/docs/ccf-api/changelog.html
@@ -33,6 +33,12 @@
 
 <h1 id="changelog">Changelog</h1>
 <p>Changelog for the Human Reference Atlas (HRA) User Interfaces</p>
+<h2 id="370---2023-06-15">3.7.0 - 2023-06-15</h2>
+<h3 id="added-in-370">Added in 3.7.0</h3>
+<ul>
+<li>Updated to CCF.OWL v2.2.0 which indexes the <a href="https://hubmapconsortium.github.io/ccf-releases/v1.4/docs/index.html">Human Reference Atlas (HRA) 5th Release (v1.4)</a> for use in the CCF UIs and CCF-API.</li>
+<li>Added CCF-API usage notebooks for <a href="ccf-api-usage.ipynb">python</a> and <a href="https://observablehq.com/@cns-iu/ccf-api-documentation-javascript">javascript</a></li>
+</ul>
 <h2 id="360---2022-10-15">3.6.0 - 2022-10-15</h2>
 <h3 id="added-in-360">Added in 3.6.0.</h3>
 <ul>

diff --git a/docs/ccf-api/js/search/search_index.js b/docs/ccf-api/js/search/search_index.js
diff --git a/docs/ccf-body-ui-wc/changelog.html b/docs/ccf-body-ui-wc/changelog.html
@@ -33,6 +33,12 @@
 
 <h1 id="changelog">Changelog</h1>
 <p>Changelog for the Human Reference Atlas (HRA) User Interfaces</p>
+<h2 id="370---2023-06-15">3.7.0 - 2023-06-15</h2>
+<h3 id="added-in-370">Added in 3.7.0</h3>
+<ul>
+<li>Updated to CCF.OWL v2.2.0 which indexes the <a href="https://hubmapconsortium.github.io/ccf-releases/v1.4/docs/index.html">Human Reference Atlas (HRA) 5th Release (v1.4)</a> for use in the CCF UIs and CCF-API.</li>
+<li>Added CCF-API usage notebooks for <a href="ccf-api-usage.ipynb">python</a> and <a href="https://observablehq.com/@cns-iu/ccf-api-documentation-javascript">javascript</a></li>
+</ul>
 <h2 id="360---2022-10-15">3.6.0 - 2022-10-15</h2>
 <h3 id="added-in-360">Added in 3.6.0.</h3>
 <ul>

diff --git a/docs/ccf-body-ui-wc/js/search/search_index.js b/docs/ccf-body-ui-wc/js/search/search_index.js
diff --git a/docs/ccf-body-ui/changelog.html b/docs/ccf-body-ui/changelog.html
@@ -33,6 +33,12 @@
 
 <h1 id="changelog">Changelog</h1>
 <p>Changelog for the Human Reference Atlas (HRA) User Interfaces</p>
+<h2 id="370---2023-06-15">3.7.0 - 2023-06-15</h2>
+<h3 id="added-in-370">Added in 3.7.0</h3>
+<ul>
+<li>Updated to CCF.OWL v2.2.0 which indexes the <a href="https://hubmapconsortium.github.io/ccf-releases/v1.4/docs/index.html">Human Reference Atlas (HRA) 5th Release (v1.4)</a> for use in the CCF UIs and CCF-API.</li>
+<li>Added CCF-API usage notebooks for <a href="ccf-api-usage.ipynb">python</a> and <a href="https://observablehq.com/@cns-iu/ccf-api-documentation-javascript">javascript</a></li>
+</ul>
 <h2 id="360---2022-10-15">3.6.0 - 2022-10-15</h2>
 <h3 id="added-in-360">Added in 3.6.0.</h3>
 <ul>

diff --git a/docs/ccf-body-ui/js/search/search_index.js b/docs/ccf-body-ui/js/search/search_index.js
diff --git a/docs/ccf-body-ui/miscellaneous/variables.html b/docs/ccf-body-ui/miscellaneous/variables.html
@@ -90,9 +90,9 @@ <h3></h3>    <table class="table table-sm table-bordered">
                 <tr>
                     <td class="col-md-4">
                         <i>Default value : </i><code>{
-  extractionSitesUrl: &#x27;http://localhost:8080/source_data/asct-b-3d-models-extraction-sites.csv&#x27;,
+  extractionSitesUrl: &#x27;http://localhost:8080/source_data/asct-b-3d-models-landmarks.csv&#x27;,
   extractionSitesConfigUrl: &#x27;http://localhost:8080/source_data/extraction-site-config.csv&#x27;,
-  anatomicalStructuresUrl: &#x27;http://localhost:8080/source_data/asct-b-3d-models-mapping.csv&#x27;,
+  anatomicalStructuresUrl: &#x27;http://localhost:8080/source_data/asct-b-3d-models-crosswalk.csv&#x27;,
   referenceOrganConfigUrl: &#x27;http://localhost:8080/source_data/reference-organ-config.csv&#x27;
 }</code>
                     </td>

diff --git a/docs/ccf-database/changelog.html b/docs/ccf-database/changelog.html
@@ -33,6 +33,12 @@
 
 <h1 id="changelog">Changelog</h1>
 <p>Changelog for the Human Reference Atlas (HRA) User Interfaces</p>
+<h2 id="370---2023-06-15">3.7.0 - 2023-06-15</h2>
+<h3 id="added-in-370">Added in 3.7.0</h3>
+<ul>
+<li>Updated to CCF.OWL v2.2.0 which indexes the <a href="https://hubmapconsortium.github.io/ccf-releases/v1.4/docs/index.html">Human Reference Atlas (HRA) 5th Release (v1.4)</a> for use in the CCF UIs and CCF-API.</li>
+<li>Added CCF-API usage notebooks for <a href="ccf-api-usage.ipynb">python</a> and <a href="https://observablehq.com/@cns-iu/ccf-api-documentation-javascript">javascript</a></li>
+</ul>
 <h2 id="360---2022-10-15">3.6.0 - 2022-10-15</h2>
 <h3 id="added-in-360">Added in 3.6.0.</h3>
 <ul>

diff --git a/docs/ccf-database/js/search/search_index.js b/docs/ccf-database/js/search/search_index.js
diff --git a/docs/ccf-eui/changelog.html b/docs/ccf-eui/changelog.html
@@ -33,6 +33,12 @@
 
 <h1 id="changelog">Changelog</h1>
 <p>Changelog for the Human Reference Atlas (HRA) User Interfaces</p>
+<h2 id="370---2023-06-15">3.7.0 - 2023-06-15</h2>
+<h3 id="added-in-370">Added in 3.7.0</h3>
+<ul>
+<li>Updated to CCF.OWL v2.2.0 which indexes the <a href="https://hubmapconsortium.github.io/ccf-releases/v1.4/docs/index.html">Human Reference Atlas (HRA) 5th Release (v1.4)</a> for use in the CCF UIs and CCF-API.</li>
+<li>Added CCF-API usage notebooks for <a href="ccf-api-usage.ipynb">python</a> and <a href="https://observablehq.com/@cns-iu/ccf-api-documentation-javascript">javascript</a></li>
+</ul>
 <h2 id="360---2022-10-15">3.6.0 - 2022-10-15</h2>
 <h3 id="added-in-360">Added in 3.6.0.</h3>
 <ul>

diff --git a/docs/ccf-eui/interfaces/DefaultIconDefinition.html b/docs/ccf-eui/interfaces/DefaultIconDefinition.html
@@ -352,16 +352,19 @@ <h3 id="inputs">Properties</h3>
   { name: &#x27;kidney&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-kidney.svg&#x27; },
   { name: &#x27;knee&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-knee.svg&#x27; },
   { name: &#x27;large-intestine&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-large-intestine.svg&#x27; },
+  { name: &#x27;larynx&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-larynx.svg&#x27; },
   { name: &#x27;liver&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-liver.svg&#x27; },
   { name: &#x27;lung-left&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-lung-left.svg&#x27; },
   { name: &#x27;lung-right&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-lung-right.svg&#x27; },
   { name: &#x27;lung&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-lung.svg&#x27; },
   { name: &#x27;lymph-nodes&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-lymph-nodes.svg&#x27; },
+  { name: &#x27;main-bronchus&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-extrapulmonary bronchus.svg&#x27; },
   { name: &#x27;mammary-gland&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-breast.svg&#x27; },
   { name: &#x27;neuron&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-neuron.svg&#x27; },
   { name: &#x27;ovaries&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-ovaries.svg&#x27; },
   { name: &#x27;ovary-left&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-ovary-left.svg&#x27; },
   { name: &#x27;ovary-right&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-ovary-right.svg&#x27; },
+  { name: &#x27;palatine-tonsil&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-palatine tonsil.svg&#x27; },
   { name: &#x27;pancreas&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-pancreas.svg&#x27; },
   { name: &#x27;pelvis-f&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-pelvis-f.svg&#x27; },
   { name: &#x27;placenta&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-placenta.svg&#x27; },
@@ -372,6 +375,7 @@ <h3 id="inputs">Properties</h3>
   { name: &#x27;spleen&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-spleen.svg&#x27; },
   { name: &#x27;stomach&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-stomach.svg&#x27; },
   { name: &#x27;thymus&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-thymus.svg&#x27; },
+  { name: &#x27;trachea&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-trachea.svg&#x27; },
   { name: &#x27;ureter-left&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-ureter-left.svg&#x27; },
   { name: &#x27;ureter-right&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-ureter-right.svg&#x27; },
   { name: &#x27;uterus&#x27;, namespace: &#x27;app&#x27;, url: &#x27;assets/icons/organs/ico-organs-uterus.svg&#x27; },

diff --git a/docs/ccf-eui/js/search/search_index.js b/docs/ccf-eui/js/search/search_index.js