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Corrected all datasets to validate with latest information. #334

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Nov 15, 2023
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Corrected all datasets to validate with latest information. #334

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b8f797c
Merge pull request #333 from hed-standard/develop
VisLab Oct 27, 2023
3f76b33
Corrected all datasets in examples to validate properly
VisLab Nov 15, 2023
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46 changes: 26 additions & 20 deletions datasets/eeg_ds004105s_hed/dataset_description.json
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{
"Name": "BCIT Auditory Cueing",
"BIDSVersion": "1.7.0",
"HEDVersion": "8.0.0",
"License": "CC0",
"Authors": [
"Javier Garcia (data)",
"Justin Brooks (data)",
"Scott Kerick (data)",
"Tony Johnson (data and curation)",
"Tim Mullen (data)",
"Jean Vettel (data)",
"Jonathan Touryan (curation)",
"Kay Robbins (curation)"],
"Acknowledgments": "Tony Johnson and Mike Dunkel from DCS Corporation originally curated the data in ESS (EEG Study Schema) format. Kay Robbins, Joe Lambeth and Jonathan Balraj of the University of Texas at San Antonio performed further curation and placed this dataset in BIDS format. The experiments were performed at Teledyne Laboratories (Durham, NC) under contract with the US Army Research Laboratory. The study was reviewed and approved by the U.S. Army Human Research Protections Office (Protocol ARL 12-040) before the study began.",
"HowToAcknowledge": "Garcia, J.O., Brooks, J., Kerick, S., Johnson, T., Mullen, T.R., Vettel, J.M., 2017. Estimating direction in brain-behavior interactions: Proactive and reactive brain states in driving. NeuroImage 150, 239-249, https://doi.org/10.1016/j.neuroimage.2017.02.057.",
"Funding": ["This research was sponsored by the Army Research Laboratory and was accomplished under Cooperative Agreement Number W911NF-10-0-0002."],
"ReferencesAndLinks": ["Garcia, J.O., Brooks, J., Kerick, S., Johnson, T., Mullen, T.R., Vettel, J.M., 2017. Estimating direction in brain-behavior interactions: Proactive and reactive brain states in driving. NeuroImage 150, 239-249. https://doi.org/10.1016/j.neuroimage.2017.02.057.",
"Bigdely-Shamlo, N., Touryan, J., Ojeda, A., Kothe, C., Mullen, T., Robbins, K., 2019. Automated EEG mega-analysis I: Spectral and amplitude characteristics across studies, NeuroImage, p. 116361, https://doi.org/10.1016/j.neuroimage.2019.116361",
"Bigdely-Shamlo, N., Touryan, J., Ojeda, A., Kothe, C., Mullen, T., Robbins, K., 2019. Automated EEG mega-analysis II: Cognitive aspects of event related features, NeuroImage, p. 116054, https://doi.org/10.1016/j.neuroimage.2019.116054"],
"DatasetDOI": "n/a"
"Name": "BCIT Auditory Cueing",
"BIDSVersion": "1.8.0",
"HEDVersion": "8.2.0",
"License": "CC0",
"Authors": [
"Javier Garcia (data)",
"Justin Brooks (data)",
"Scott Kerick (data)",
"Tony Johnson (data and curation)",
"Tim Mullen (data)",
"Jean Vettel (data)",
"Jonathan Touryan (curation)",
"Kay Robbins (curation)"
],
"Acknowledgments": "Tony Johnson and Mike Dunkel from DCS Corporation originally curated the data in ESS (EEG Study Schema) format. Kay Robbins, Joe Lambeth and Jonathan Balraj of the University of Texas at San Antonio performed further curation and placed this dataset in BIDS format. The experiments were performed at Teledyne Laboratories (Durham, NC) under contract with the US Army Research Laboratory. The study was reviewed and approved by the U.S. Army Human Research Protections Office (Protocol ARL 12-040) before the study began.",
"HowToAcknowledge": "Garcia, J.O., Brooks, J., Kerick, S., Johnson, T., Mullen, T.R., Vettel, J.M., 2017. Estimating direction in brain-behavior interactions: Proactive and reactive brain states in driving. NeuroImage 150, 239-249, https://doi.org/10.1016/j.neuroimage.2017.02.057.",
"Funding": [
"This research was sponsored by the Army Research Laboratory and was accomplished under Cooperative Agreement Number W911NF-10-0-0002."
],
"EthicsApprovals": ["U.S. Army Human Research Protections Office (Protocol ARL 12–040)"],
"ReferencesAndLinks": [
"Garcia, J.O., Brooks, J., Kerick, S., Johnson, T., Mullen, T.R., Vettel, J.M., 2017. Estimating direction in brain-behavior interactions: Proactive and reactive brain states in driving. NeuroImage 150, 239-249. https://doi.org/10.1016/j.neuroimage.2017.02.057.",
"Bigdely-Shamlo, N., Touryan, J., Ojeda, A., Kothe, C., Mullen, T., Robbins, K., 2019. Automated EEG mega-analysis I: Spectral and amplitude characteristics across studies, NeuroImage, p. 116361, https://doi.org/10.1016/j.neuroimage.2019.116361",
"Bigdely-Shamlo, N., Touryan, J., Ojeda, A., Kothe, C., Mullen, T., Robbins, K., 2019. Automated EEG mega-analysis II: Cognitive aspects of event related features, NeuroImage, p. 116054, https://doi.org/10.1016/j.neuroimage.2019.116054"
],
"DatasetDOI": "doi:10.18112/openneuro.ds004105.v1.0.0"
}
9 changes: 3 additions & 6 deletions .../eeg_ds004105s_hed/sub-01/ses-01/eeg/sub-01_ses-01_task-DriveRandomSound_run-1_events.tsv
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Expand Up @@ -2614,8 +2614,7 @@ onset duration sample value
2391.7802734375 n/a 2449184 2621
2394.2431640625 n/a 2451706 1321
2394.3642578125 n/a 2451830 1322
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2394.8984375 n/a 2452377 1132
2394.8984375 n/a 2452377 1130
2400.03125 n/a 2457633 2622
2400.53515625 n/a 2458149 4220
2402.078125 n/a 2459729 4210
Expand Down Expand Up @@ -2689,8 +2688,7 @@ onset duration sample value
2473.0380859375 n/a 2532392 2621
2474.7978515625 n/a 2534194 1321
2474.9345703125 n/a 2534334 1322
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2480.2685546875 n/a 2539796 1321
2480.3916015625 n/a 2539922 1322
2481.2666015625 n/a 2540818 1131
Expand All @@ -2717,8 +2715,7 @@ onset duration sample value
2500.4091796875 n/a 2560420 1322
2507.5205078125 n/a 2567702 1321
2507.6572265625 n/a 2567842 1322
2508.5126953125 n/a 2568718 1131
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2513.3984375 n/a 2573721 3200
2513.7919921875 n/a 2574124 2621
2513.8408203125 n/a 2574174 1321
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68 changes: 4 additions & 64 deletions .../eeg_ds004105s_hed/sub-01/ses-01/eeg/sub-01_ses-01_task-DriveRandomSound_run-2_events.tsv
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onset duration sample value
0.0009765625 n/a 2 1311
0.0009765625 n/a 2 1312
0.0009765625 n/a 2 1311
0.0009765625 n/a 2 1312
0.0009765625 n/a 2 1310
1.599609375 n/a 1639 1311
1.748046875 n/a 1791 1312
5.23828125 n/a 5365 3111
Expand Down Expand Up @@ -1415,8 +1412,7 @@ onset duration sample value
1301.8271484375 n/a 1333072 4312
1303.7255859375 n/a 1335016 1111
1303.759765625 n/a 1335051 1112
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1311.3916015625 n/a 1342866 1311
Expand Down Expand Up @@ -2108,8 +2104,7 @@ onset duration sample value
2028.8720703125 n/a 2077566 1312
2029.3603515625 n/a 2078066 4210
2030.6865234375 n/a 2079424 2622
2030.8076171875 n/a 2079548 1111
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2030.8076171875 n/a 2079548 1110
2032.4150390625 n/a 2081194 1311
2032.5498046875 n/a 2081332 1312
2033.9453125 n/a 2082761 1311
Expand Down Expand Up @@ -2909,60 +2904,5 @@ onset duration sample value
2805.2294921875 n/a 2872556 2621
2807.4208984375 n/a 2874800 1311
2807.5498046875 n/a 2874932 1312
2811.6064453125 n/a 2879086 1311
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2811.6064453125 n/a 2879086 1311
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2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1212
2811.6064453125 n/a 2879086 3112
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1311
2811.6064453125 n/a 2879086 1312
2811.6064453125 n/a 2879086 1310
2811.6064453125 n/a 2879086 2622
16 changes: 3 additions & 13 deletions .../eeg_ds004105s_hed/sub-02/ses-01/eeg/sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv
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onset duration sample value
0.0009765625 n/a 2 1311
0.0009765625 n/a 2 1312
0.0009765625 n/a 2 1311
0.0009765625 n/a 2 1312
0.0009765625 n/a 2 1310
2.173828125 n/a 2227 1311
2.3212890625 n/a 2378 1312
5.3349609375 n/a 5464 3111
Expand Down Expand Up @@ -872,8 +869,7 @@ onset duration sample value
800.54296875 n/a 819757 1312
800.7646484375 n/a 819984 4210
800.8193359375 n/a 820040 4312
801.7109375 n/a 820953 1111
801.7109375 n/a 820953 1112
801.7109375 n/a 820953 1110
806.0224609375 n/a 825368 3200
806.4833984375 n/a 825840 2621
809.48046875 n/a 828909 1121
Expand Down Expand Up @@ -2834,15 +2830,9 @@ onset duration sample value
2745.154296875 n/a 2811039 1312
2745.224609375 n/a 2811111 4210
2745.8466796875 n/a 2811748 4312
2749.6728515625 n/a 2815666 1311
2749.6728515625 n/a 2815666 1312
2749.6728515625 n/a 2815666 1311
2749.6728515625 n/a 2815666 1312
2749.6728515625 n/a 2815666 1311
2749.6728515625 n/a 2815666 1310
2749.6728515625 n/a 2815666 1212
2749.6728515625 n/a 2815666 3112
2749.6728515625 n/a 2815666 1312
2749.6728515625 n/a 2815666 2622
2751.7109375 n/a 2817753 3200
2752.228515625 n/a 2818283 2621
2752.38671875 n/a 2818445 1111
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3 changes: 1 addition & 2 deletions .../eeg_ds004105s_hed/sub-02/ses-01/eeg/sub-02_ses-01_task-DriveRandomSound_run-2_events.tsv
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Expand Up @@ -2459,8 +2459,7 @@ onset duration sample value
2187.23046875 n/a 2239725 2622
2189.2412109375 n/a 2241784 1321
2189.3671875 n/a 2241913 1322
2190.1142578125 n/a 2242678 1141
2190.1142578125 n/a 2242678 1142
2190.1142578125 n/a 2242678 1140
2195.5712890625 n/a 2248266 1321
2195.6767578125 n/a 2248374 1322
2196.4677734375 n/a 2249184 1131
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94 changes: 61 additions & 33 deletions datasets/eeg_ds004105s_hed/task-DriveRandomSound_events.json
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@@ -1,54 +1,76 @@
{
"value": {
"onset": {
"Description": "The time of the event relative to the beginning of the recording",
"Units": "s"
},
"duration": {
"Description": "The duration of the event (not applicable for events specified by Onset/Offset.",
"Units": "s"
},
"sample": {
"Description": "The sample number of this event (samples start at 1)."
},
"value": {
"Description": "The event codes from the control software.",
"Levels": {
"1111": "Start of left perturbation",
"1112": "End of left perturbation",
"1121": "Start of right perturbation",
"1122": "End of right perturbation",
"1110": "Left perturbation no duration - considered a recording error.",
"1111": "Start of left perturbation.",
"1112": "End of left perturbation.",
"1120": "Right perturation no duration - considered a recording error.",
"1121": "Start of right perturbation.",
"1122": "End of right perturbation.",
"1130": "Left perturbation with cue no duration - considered a recording error.",
"1131": "Start of a left perturbation cued by a sound.",
"1132": "End of a left perturbation cued by a sound.",
"1140": "Right perturbation with cue no duration - considered a recording error.",
"1141": "Start of a right perturbation cued by a sound.",
"1142": "End of a right perturbation cued by a sound.",
"1211": "Start driving car forward.",
"1212": "End driving car forward.",
"1310": "Non-cue tone zero duration - considered a recording error.",
"1311": "Beginning of non-cue tone instance.",
"1312": "Beginning of non-cue tone instance.",
"1312": "End of non-cue tone instance.",
"1321": "Beginning of a cue tone instance.",
"1322": "End of a cue tone instance.",
"2621": "Start showing a 25 MPH sign.",
"2622": "End showing a 25 MPH sign.",
"3111": "Start of a trial",
"3112": "End of a trial",
"3200": "All at high-perturbation rate.",
"2621": "Start showing a 45 MPH sign.",
"2622": "End showing a 45 MPH sign.",
"3111": "Start of a trial.",
"3112": "End of a trial.",
"3200": "All at high-perturbation rate with low visual complexity.",
"3310": "Scenario is a straight road",
"4210": "Vehicle moves into the defined lane of travel from either the left or right side of the lane",
"4220": "Vehicle moves right of the defined lane of travel",
"4230": "Vehicle moves left of the defined lane of travel",
"4210": "Vehicle moves into the defined lane of travel from either the left or right side of the lane.",
"4220": "Vehicle moves right of the defined lane of travel.",
"4230": "Vehicle moves left of the defined lane of travel.",
"4311": "Driver starts correcting lane position.",
"4312": "Driver has completed the lane position correction.",
"4411": "Vehicle approached within 3 meters of obstacle resulting in near miss."
},
"HED": {
"1110": "(Experiment-control, Mishap)",
"1111": "(Def/Left-perturb, Onset)",
"1112": "(Def/Left-perturb, Offset)",
"1120": "(Experiment-control, Mishap)",
"1121": "(Def/Right-perturb, Onset)",
"1122": "(Def/Right-perturb, Offset)",
"1131": "(Def/Left-perturb, Onset)",
"1130": "(Experiment-control, Mishap)",
"1131": "(Def/Left-perturb, Onset), Def/Cue-sound",
"1132": "(Def/Left-perturb, Offset)",
"1141": "(Def/Right-perturb, Onset)",
"1140": "(Experiment-control, Mishap)",
"1141": "(Def/Right-perturb, Onset), Def/Cue-sound",
"1142": "(Def/Right-perturb, Onset)",
"1211": "(Def/Drive-forward, Onset)",
"1212": "(Def/Drive-forward, Offset)",
"1211": "(Def/Drive-vehicle, (Forward), Onset)",
"1212": "(Def/Drive-vehicle, Offset)",
"1310": "(Experiment-control, Mishap)",
"1311": "(Def/Non-cue-sound, Onset)",
"1312": "(Def/Non-cue-sound, Offset)",
"1321": "(Def/Cue-sound, Onset)",
"1322": "(Def/Cue-sound, Offset)",
"2621": "(Def/Show-25mph-sign, Onset)",
"2622": "(Def/Show-25mph-sign, Offset)",
"2621": "(Def/Show-speed-sign/45, Onset)",
"2622": "(Def/Show-speed-sign/45, Offset)",
"3111": "(Def/Trial-marker, Onset)",
"3112": "(Def/Trial-marker, Offset)",
"3200": "(Def/Tile-change, (Condition-Variable/High_perturbation_rate, Condition-variable/Low_visual_complexity), Onset)",
"3310": "(Paved-terrain, Label/Straight_road)",
"3200": "(Def/Tile-change, (Condition-Variable/High-perturbation-rate, Condition-variable/Low-visual-complexity, Label/Tile0), Onset)",
"3310": " (Paved-terrain, Label/Straight_road)",
"4210": "Agent-action, Experiment-participant, (Operate, (Vehicle, (Within, Lane)))",
"4220": "Agent-action, Experiment-participant, (Operate, (Vehicle, (To-right-of, Lane)))",
"4230": "Agent-action, Experiment-participant, (Operate, (Vehicle, (To-left-of, Lane)))",
Expand All @@ -57,27 +79,33 @@
"4411": "Sensory-event, Visual-presentation, Near-miss, (Object, (Close-to, Vehicle))"
}
},
"bcit_defs": {
"hed_defs": {
"Levels": {
"course_correction": "Course correction has been detected because the vehicle has a heading error of more than 5.1566 degrees from the forward direction or the driver is steering away from the perturbation with a steering angle of more than 4 degrees.",
"cue_sound": "A sound which is meant to signal the start of a perturbation.",
"drive_vehicle": "Drive car.",
"driving_scenario": "A driving scenario with other cars or pedestrians in some configuration.",
"left_perturb": "Perturbation that moves the vehicle to the left via perpendicular force.",
"non_cue_sound": "A sound which is not meant to cue the start of a perturbation.",
"play_sound_clip": "Play a sound clip.",
"press_button": "Participant presses a button",
"right_perturb": "Perturbation that moves the vehicle to the right via perpendicular force.",
"drive_forward": "Drive car in the forward direction.",
"show_25mph": "Show a 25 mph road sign.",
"show_speed_sign": "A mph road sign of specified speed.",
"trial_marker": "Data collection for a trial",
"non_cue_sound": "A sound which is not meant to cue the start of a perturbation.",
"cue_sound": "A sound which is meant to signal the start of a perturbation.",
"course_correction": "Course correction has been detected because the vehicle has a heading error of more than 5.1566 degrees from the forward direction or the driver is steering away from the perturbation with a steering angle of more than 4 degrees.",
"tile_change": "A change of experimental condition with a 2 by 2 design varying visual complexity and perturbation rate."
},
"HED": {
"course_correction": "(Definition/Course-correction, (Agent-action, Experiment-participant, ((Operate, Label/Drive), (Vehicle, (Towards, Lane)))))",
"cue_sound": "(Definition/Cue-sound, (Sensory-event, Auditory-presentation, Sound, (Cue, (Away-from, (Center-of, Lane)))))",
"drive_vehicle": "(Definition/Drive-vehicle, (Agent-action, (Human-agent, Experiment-participant), ((Operate, Label/Drive), Car)))",
"driving_scenario": "(Definition/Driving-scenario/#, (Label/#, Environmental-property, Road, Outdoors))",
"left_perturb": "(Definition/Left-perturb, (Experiment-control, Sensory-event, Controller-agent, ((Push, (Car)), (Left-side-of, Lane))))",
"non_cue_sound": "(Definition/Non-cue-sound, (Sensory-event, Auditory-presentation, Sound, (Distractor, Non-informative, Random)))",
"play_sound_clip": "(Definition/Play-sound-clip/#, (Auditory-presentation, Audio-clip, Label/#))",
"press_button": "(Definition/Press-button, (Agent-action, Participant-response, (Experiment-participant, (Press, Push-button))))",
"right_perturb": "(Definition/Right-perturb, (Experiment-control, Sensory-event, Controller-agent, ((Push, (Car)), (Right-side-of, Lane))))",
"drive_forward": "(Definition/Drive-forward, (Agent-action, (Human-agent, Experiment-participant), ((Operate/Drive, (Car)), Forward)))",
"show_25mph": "(Definition/Show-25mph-sign, (Sensory-event, Visual-presentation, (Navigational-object/Road-sign, Label/25_mph)))",
"show_speed_sign": "(Definition/Show-speed-sign/#, (Sensory-event, Visual-presentation, ((Navigational-object, Label/Road-sign), Speed/# mph)))",
"trial_marker": "(Definition/Trial-marker, (Experiment-structure, Experimental-trial))",
"non_cue_sound": "(Definition/Non-cue-sound, (Sensory-event, Auditory-presentation, Sound, Distractor, Non-informative, Random))",
"cue_sound": "(Definition/Cue-sound, (Sensory-event, Auditory-presentation, Sound, Cue, (Away-from, (Center-of, Lane))))",
"course_correction": "(Definition/Course-correction, (Agent-action, Experiment-participant, (Operate, (Vehicle, (Towards, Lane)))))",
"tile_change": "(Definition/Tile-change, (Experiment-structure, (Environmental-property, Terrain), (Experimental-stimulus, Temporal-rate)))"
}
}
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