v1.1.6 unpin python packages (#212)

Unpins all cite process python packages from their exact versions, pins them to **major versions**. This ensures users will be on the latest versions of packages, without breaking changes (assuming the packages follow semver properly), and without having to constantly update their template version (which can be a pain). Closes #210 Addresses #211 FOR THE TEMPLATE MAINTAINER(S) New template version checklist: - [x] I have updated CITATION and CHANGELOG as appropriate. - [x] I have updated lab-website-template-docs as appropriate. - [x] I have checked the testbed as appropriate. --------- Co-authored-by: vincerubinetti <[email protected]>
greenelab · Oct 6, 2023 · 93122f8 · 93122f8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,6 +2,10 @@
 
 Reference: common-changelog.org
 
+## 1.1.6 - 2023-10-06
+
+- Use latest minor versions of Python packages in auto-cite script.
+
 ## 1.1.5 - 2023-05-19
 
 ### Changes

diff --git a/CITATION.cff b/CITATION.cff
@@ -1,8 +1,8 @@
 # citation metadata for the template itself
 
 title: "Lab Website Template"
-version: 1.1.5
-date-released: 2023-05-19
+version: 1.1.6
+date-released: 2023-10-06
 url: "https://github.com/greenelab/lab-website-template"
 authors:
   - family-names: "Rubinetti"

diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db
diff --git a/_cite/requirements.txt b/_cite/requirements.txt
@@ -1,6 +1,7 @@
-manubot==0.5.5
-PyYAML==6.0
-diskcache==5.4.0
-rich==12.6.0
-python-dotenv==0.21.0
-google-search-results==2.4.1
+manubot~=0.6
+PyYAML~=6.0
+diskcache~=5.6
+rich~=13.6
+python-dotenv~=0.21
+google-search-results~=2.4
+
diff --git a/_data/citations.yaml b/_data/citations.yaml
@@ -42,6 +42,28 @@
   orcid: 0000-0002-4655-3773
   plugin: orcid.py
   file: orcid.yaml
+- id: doi:10.1093/gigascience/giad047
+  title: Hetnet connectivity search provides rapid insights into how biomedical entities
+    are related
+  authors:
+  - Daniel S Himmelstein
+  - Michael Zietz
+  - Vincent Rubinetti
+  - Kyle Kloster
+  - Benjamin J Heil
+  - Faisal Alquaddoomi
+  - Dongbo Hu
+  - David N Nicholson
+  - Yun Hao
+  - Blair D Sullivan
+  - Michael W Nagle
+  - Casey S Greene
+  publisher: GigaScience
+  date: '2022-12-28'
+  link: https://doi.org/gsd85n
+  orcid: 0000-0002-4655-3773
+  plugin: orcid.py
+  file: orcid.yaml
 - id: doi:10.1186/s13059-020-02021-3
   title: Compressing gene expression data using multiple latent space dimensionalities
     learns complementary biological representations