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Update design pattern docs #29037

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Update design pattern docs #29037

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2 changes: 1 addition & 1 deletion docs/patterns/multi_organism_process.md
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Expand Up @@ -29,7 +29,7 @@ TODO

## Equivalent to

`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))
`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))



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2 changes: 1 addition & 1 deletion docs/patterns/protein_complex_by_activity.md
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Expand Up @@ -29,7 +29,7 @@ TODO

## Equivalent to

[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)



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2 changes: 1 addition & 1 deletion docs/patterns/single_organism_process.md
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Expand Up @@ -29,7 +29,7 @@ TODO

## Equivalent to

`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))
`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))



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2 changes: 1 addition & 1 deletion src/design_patterns/biosynthetic_process.tsv
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Expand Up @@ -275,7 +275,7 @@ http://purl.obolibrary.org/obo/GO_1901934 bicyclogermacrene biosynthetic process
http://purl.obolibrary.org/obo/GO_0006699 bile acid biosynthetic process http://purl.obolibrary.org/obo/CHEBI_36235 bile acid anion
http://purl.obolibrary.org/obo/GO_0009102 biotin biosynthetic process http://purl.obolibrary.org/obo/CHEBI_57586 biotinate
http://purl.obolibrary.org/obo/GO_0015957 bis(5'-nucleosidyl) oligophosphate biosynthetic process http://purl.obolibrary.org/obo/CHEBI_61081 bis(5'-nucleosidyl) oliogophosphate
http://purl.obolibrary.org/obo/GO_1902758 bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process http://purl.obolibrary.org/obo/CHEBI_22894 Mo(=O)-bis(molybdopterin guanine dinucleotide)
http://purl.obolibrary.org/obo/GO_1902758 bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process http://purl.obolibrary.org/obo/CHEBI_60539 Mo(=O)-bis(molybdopterin guanine dinucleotide)(4-)
http://purl.obolibrary.org/obo/GO_1905266 blasticidin S biosynthetic process http://purl.obolibrary.org/obo/CHEBI_57289 blasticidin S(1+)
http://purl.obolibrary.org/obo/GO_0002936 bradykinin biosynthetic process http://purl.obolibrary.org/obo/CHEBI_132988 bradykinin(2+)
http://purl.obolibrary.org/obo/GO_0009082 branched-chain amino acid biosynthetic process http://purl.obolibrary.org/obo/CHEBI_22918 branched-chain amino acid
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3 changes: 0 additions & 3 deletions src/design_patterns/involved_in_x_y.tsv
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Expand Up @@ -69,7 +69,6 @@ http://purl.obolibrary.org/obo/GO_0086023 adenylate cyclase-activating adrenergi
http://purl.obolibrary.org/obo/GO_0002287 alpha-beta T cell activation involved in immune response http://purl.obolibrary.org/obo/GO_0046631 alpha-beta T cell activation http://purl.obolibrary.org/obo/GO_0006955 immune response
http://purl.obolibrary.org/obo/GO_0002293 alpha-beta T cell differentiation involved in immune response http://purl.obolibrary.org/obo/GO_0046632 alpha-beta T cell differentiation http://purl.obolibrary.org/obo/GO_0006955 immune response
http://purl.obolibrary.org/obo/GO_0002310 alpha-beta T cell proliferation involved in immune response http://purl.obolibrary.org/obo/GO_0046633 alpha-beta T cell proliferation http://purl.obolibrary.org/obo/GO_0006955 immune response
http://purl.obolibrary.org/obo/GO_0072316 alpha-glucan catabolic process involved in ascospore release from ascus http://purl.obolibrary.org/obo/GO_0030980 alpha-glucan catabolic process http://purl.obolibrary.org/obo/GO_0071998 ascospore release from ascus
http://purl.obolibrary.org/obo/GO_0009971 anastral spindle assembly involved in male meiosis http://purl.obolibrary.org/obo/GO_0055048 anastral spindle assembly http://purl.obolibrary.org/obo/GO_0007140 male meiotic nuclear division
http://purl.obolibrary.org/obo/GO_0035475 angioblast cell migration involved in selective angioblast sprouting http://purl.obolibrary.org/obo/GO_0035476 angioblast cell migration http://purl.obolibrary.org/obo/GO_0035474 selective angioblast sprouting
http://purl.obolibrary.org/obo/GO_0060978 angiogenesis involved in coronary vascular morphogenesis http://purl.obolibrary.org/obo/GO_0001525 angiogenesis http://purl.obolibrary.org/obo/GO_0060976 coronary vasculature development
Expand Down Expand Up @@ -438,7 +437,6 @@ http://purl.obolibrary.org/obo/GO_0043272 ethylene biosynthesis involved in jasm
http://purl.obolibrary.org/obo/GO_0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane http://purl.obolibrary.org/obo/GO_0006887 exocytosis http://purl.obolibrary.org/obo/GO_0098969 neurotransmitter receptor transport to postsynaptic membrane
http://purl.obolibrary.org/obo/GO_0140029 exocytic process http://purl.obolibrary.org/obo/GO_0009987 cellular process http://purl.obolibrary.org/obo/GO_0006887 exocytosis
http://purl.obolibrary.org/obo/GO_0061148 extracellular matrix organization involved in endocardium development http://purl.obolibrary.org/obo/GO_0030198 extracellular matrix organization http://purl.obolibrary.org/obo/GO_0003157 endocardium development
http://purl.obolibrary.org/obo/GO_0072000 extracellular polysaccharide catabolic process involved in ascospore release from ascus http://purl.obolibrary.org/obo/GO_0071999 extracellular polysaccharide catabolic process http://purl.obolibrary.org/obo/GO_0071998 ascospore release from ascus
http://purl.obolibrary.org/obo/GO_0016321 female meiosis chromosome segregation http://purl.obolibrary.org/obo/GO_0098813 nuclear chromosome segregation http://purl.obolibrary.org/obo/GO_0007143 female meiotic nuclear division
http://purl.obolibrary.org/obo/GO_0051309 female meiosis chromosome separation http://purl.obolibrary.org/obo/GO_0051304 chromosome separation http://purl.obolibrary.org/obo/GO_0007143 female meiotic nuclear division
http://purl.obolibrary.org/obo/GO_0016345 female meiotic chromosome movement towards spindle pole http://purl.obolibrary.org/obo/GO_0051305 chromosome movement towards spindle pole http://purl.obolibrary.org/obo/GO_0007143 female meiotic nuclear division
Expand Down Expand Up @@ -773,7 +771,6 @@ http://purl.obolibrary.org/obo/GO_0060474 positive regulation of flagellated spe
http://purl.obolibrary.org/obo/GO_2000526 positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation http://purl.obolibrary.org/obo/GO_0010560 positive regulation of glycoprotein biosynthetic process http://purl.obolibrary.org/obo/GO_0001771 immunological synapse formation
http://purl.obolibrary.org/obo/GO_0001988 positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure http://purl.obolibrary.org/obo/GO_0010460 positive regulation of heart rate http://purl.obolibrary.org/obo/GO_0001982 baroreceptor response to decreased systemic arterial blood pressure
http://purl.obolibrary.org/obo/GO_1902110 positive regulation of mitochondrial membrane permeability involved in apoptotic process http://purl.obolibrary.org/obo/GO_0035794 positive regulation of mitochondrial membrane permeability http://purl.obolibrary.org/obo/GO_0006915 apoptotic process
http://purl.obolibrary.org/obo/GO_2000777 positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia http://purl.obolibrary.org/obo/GO_0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process http://purl.obolibrary.org/obo/GO_0071456 cellular response to hypoxia
http://purl.obolibrary.org/obo/GO_0048942 posterior lateral line nerve glial cell morphogenesis involved in differentiation http://purl.obolibrary.org/obo/GO_0000902 cell morphogenesis http://purl.obolibrary.org/obo/GO_0048941 posterior lateral line nerve glial cell development
http://purl.obolibrary.org/obo/GO_0060878 pouch outgrowth involved in semicircular canal formation http://purl.obolibrary.org/obo/GO_0060571 morphogenesis of an epithelial fold http://purl.obolibrary.org/obo/GO_0060876 semicircular canal formation
http://purl.obolibrary.org/obo/GO_1902299 pre-replicative complex assembly involved in cell cycle DNA replication http://purl.obolibrary.org/obo/GO_0036388 pre-replicative complex assembly http://purl.obolibrary.org/obo/GO_0044786 cell cycle DNA replication
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2 changes: 1 addition & 1 deletion src/design_patterns/metabolic_process.tsv
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Expand Up @@ -336,7 +336,7 @@ http://purl.obolibrary.org/obo/GO_0008206 bile acid metabolic process http://pur
http://purl.obolibrary.org/obo/GO_0006768 biotin metabolic process http://purl.obolibrary.org/obo/CHEBI_57586 biotinate
http://purl.obolibrary.org/obo/GO_0018879 biphenyl metabolic process http://purl.obolibrary.org/obo/CHEBI_17097 biphenyl
http://purl.obolibrary.org/obo/GO_0015956 bis(5'-nucleosidyl) oligophosphate metabolic process http://purl.obolibrary.org/obo/CHEBI_61081 bis(5'-nucleosidyl) oliogophosphate
http://purl.obolibrary.org/obo/GO_1902757 bis(molybdopterin guanine dinucleotide)molybdenum metabolic process http://purl.obolibrary.org/obo/CHEBI_22894 Mo(=O)-bis(molybdopterin guanine dinucleotide)
http://purl.obolibrary.org/obo/GO_1902757 bis(molybdopterin guanine dinucleotide)molybdenum metabolic process http://purl.obolibrary.org/obo/CHEBI_60539 Mo(=O)-bis(molybdopterin guanine dinucleotide)(4-)
http://purl.obolibrary.org/obo/GO_1905264 blasticidin S metabolic process http://purl.obolibrary.org/obo/CHEBI_57289 blasticidin S(1+)
http://purl.obolibrary.org/obo/GO_0033967 box C/D sno(s)RNA metabolic process http://purl.obolibrary.org/obo/SO_0000593 C_D_box_snoRNA
http://purl.obolibrary.org/obo/GO_0033979 box H/ACA sno(s)RNA metabolic process http://purl.obolibrary.org/obo/SO_0000594 H_ACA_box_snoRNA
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9 changes: 0 additions & 9 deletions src/ontology/imports/go-pattern-conformance.ttl
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Expand Up @@ -33416,9 +33416,6 @@
<http://purl.obolibrary.org/obo/go/patterns/import_across_membrane.yaml> .


<http://purl.obolibrary.org/obo/GO_0072000> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/involved_in_x_y.yaml> .


<http://purl.obolibrary.org/obo/GO_0072002> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/anatomical_structure_development.yaml> .


Expand Down Expand Up @@ -34068,9 +34065,6 @@
<http://purl.obolibrary.org/obo/GO_0072308> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .


<http://purl.obolibrary.org/obo/GO_0072316> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/involved_in_x_y.yaml> .


<http://purl.obolibrary.org/obo/GO_0072318> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/cc_disassembly.yaml> .


Expand Down Expand Up @@ -56659,9 +56653,6 @@
<http://purl.obolibrary.org/obo/GO_2000774> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .


<http://purl.obolibrary.org/obo/GO_2000777> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/involved_in_x_y.yaml> .


<http://purl.obolibrary.org/obo/GO_2000779> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/regulation.yaml> ,
<http://purl.obolibrary.org/obo/go/patterns/regulation_by.yaml> .

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